Monodelphis domestica (gray short-tailed opossum): 100618603
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Entry
100618603 CDS
T01031
Symbol
PRPF6
Name
(RefSeq) pre-mRNA processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100618603 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdo03041
]
100618603 (PRPF6)
Spliceosome [BR:
mdo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100618603 (PRPF6)
Complex C
U5 SnRNP specific factors
100618603 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
Suf
TPR_16
TPR_17
HAT_Syf1_CNRKL1_N
TPR_2
TPR_8
TPR_CcmH_CycH
ARM_TT21_2nd
TPR_1
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
100618603
NCBI-ProteinID:
XP_007507886
Ensembl:
ENSMODG00000017051
LinkDB
All DBs
Position
1:complement(472620637..472663513)
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AA seq
831 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEXTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTAETPYITRGPEPVFMKSVKLEWVLGNIAAAQDLCEEALKHYEDFPK
LWMMKGQIEEQEELTEKAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSR
LKNPKNPDLWLESVRLEYRAGLKNIANTLMAKALQECPNSGKEQVSNIYII
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaagaagaagccattcctggggatgccggcgcccctcggctacgtgccaggg
ctaggccgtggagccaccggtttcaccacccggtcagatattgggcctgctcgagatgcc
aatgacccagtggatgatcgacatgctccgcctggcaagaggactgtaggggaccagatg
aagaaaaatcaggcagcagatgatgatgatgaagatctgaatgacactaactatgatgag
tttaatggttatgctggaagtcttttctccagtggtccttatgaaaaggatgatgaggaa
gcagatgctatttatgcagcattggacaaaaggatggatgaaagaagaaaagaaagaagg
gaacagagagagaaagaagaaattgaaaaatatcgtatggaacgtcctaaaattcagcag
cagttctcagatctgaaaagaaaattggcagaagttacagaagaggagtggctaagtatt
cctgaagttggtgatgctagaaacaaacgccagcggaatccacgatatgaaaaacttacc
ccagttcctgacagtttctttgctaaacatttacagactggagagaaccacacttcagtg
gatccccgacaaacacaatttggaggtcttaatacaccctacccaggaggattaaatact
ccatatccaggtggaatgacacctgggttaatgacgcctggtacaggtgaattggacatg
aggaagataggccaagccaggaacactttgatggatatgcgattgagccaggtgtctgat
tcagtgagtgggcagactgtggtggatcccaagggttatctcacagatttgaattctatg
attcccacccatggaggagatatcaatgacattaaaaaagcccgtttacttctgaagtct
gtgagagagacaaatccccatcatcctccagcctggattgcttcagctcgcttggaagag
ntcactggaaaactacaagtagctcgaaacctcataatgaaagggacagaaatgtgtcct
aagagtgaagatgtatggctagaagcagcccgtctacagcctggtgatacggccaaggca
gtggttgcccaagctgttcgccatctcccacagtctgtccggatttatattagagcagca
gaacttgaaacagacatccgagcaaagaaacgtgttcttaggaaagctcttgaacatgtt
ccaaactctgttcgcttgtggaaggcagctgtggaactagaagagcctgaagatgcaaga
ataatgctaagccgagctgtggaatgctgtcccactagtgtggagctttggcttgctttg
gcaagactggagacctatgagaatgcccgcaaggtcttaaacaaagcacgtgagaacatt
cccacagatcggcacatctggattactgcagccaaactagaagaagccaatggaaacact
cagatggtggagaaaatcattgacagagccatcacatcacttagggcaaatggtgtagaa
atcaacagagagcagtggatccaggatgctgaggagtgtgataaagctgggagtgtggcc
acctgccaagctgttatgcgtgcagtcattggcattgggattgaggaagaagacagaaaa
catacctggatggaagatgcagatagttgtgttgcccacaatgcactggagtgtgcccga
gctatttatgcttatgccctgcaagttttccctagcaagaagagtgtctggttgcgagct
gcttactttgagaagaaccatgggaccagagaatccctcgaagcactcctacagagggca
gtggcccactgtcctaaggctgaggtgctctggctcatgggtgccaaatccaagtggttg
gcgggagatgtacctgctgcaagaagcatcttggccttggctttccaggccaaccccaac
agcgaagagatctggttggctgctgtgaaactcgagtcagagaacaatgaatatgaacgg
gcaaggaggctgctggccaaggctcggagcagtgctcccactgcagagactccttatata
acaagagggcctgaacctgtgttcatgaaatctgtgaagcttgagtgggtgctggggaac
attgcagctgctcaggatctctgtgaagaagccttgaaacactatgaagatttccccaaa
ctgtggatgatgaaagggcagattgaggaacaggaagaactgactgaaaaagcccgggaa
gcctataaccaggggttgaagaagtgtccccactctacacccctatggcttttactttca
agactggaggagaaggttggacagctaactagagcaagagccattttggagaaatctcgt
ttgaagaatccaaagaaccctgatttgtggttagaatctgtgagattagaataccgagct
ggactgaagaatattgctaatacactcatggcaaaggccctgcaggaatgtcccaactca
ggtaaagaacaagtttcaaatatatatatcatataa
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