Monodelphis domestica (gray short-tailed opossum): 100619266
Help
Entry
100619266 CDS
T01031
Symbol
COL20A1
Name
(RefSeq) collagen type XX alpha 1 chain
KO
K24357
collagen type XX alpha
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100619266 (COL20A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Ig_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
100619266
NCBI-ProteinID:
XP_007476973
Ensembl:
ENSMODG00000016855
LinkDB
All DBs
Position
1:complement(474316681..474396040)
Genome browser
AA seq
1354 aa
AA seq
DB search
MTAQVCICIWLVWASVLDLLHGQGPSPGTSRLRLTVLSEDRLQMKWKESEGNTNGYKVQV
KPMAGDSEQEVMLTTKTPKVTVVGLSPTKEYTLQIFALSGSRDTLLARRRFVIEDLKSIS
TGRNSRKPSGETLEFIPSSVGNHEFDQVPELEVASPTWSGVSPTLGPQFYCDTSIPVDIV
FLVDGSWSIGRSNFRLIREFLANVISPFHIAQDKVRIGLSQYSGDPRTEWNLNSFSTKED
ILEAIRNLRYKGGNTFTGLALTHVLEQNLKLEAGSRSEAVKVVILLTDGKSQDDAGLAAQ
VLKDVGIDIFAIGVKNADESELTHLASLPLDVTVHNVLDFPLLGNLTSRLIRLLCWKIQE
RSRSRDPGIPANRWPHPSPTNLIVSEVTASGFRLAWTPPLEPARKYRIIYHPSRGGTPRE
VTVEGATSSAQLLNLTSNTEYLVTVFPVYKDGVGEGLRDIVTTLPLSPPSSLTIFSVDHN
SIHLTWKPSNKATEYLVHCTSSASLREQEADEEEEGGREVLVRDPEVLLKGLAPGTEYSI
AVYALFGEEISEPQSIQAKTLSLDLPKHLSFSEVSHSSVRVHWEASLRGVRMYHVSYVSL
EGNQAGEIDVSRNASSVNLAPLSSSTSYIVSVTSVYKDGDSSTLTGRVTTRKVPAPSHLK
VTELPGDDVRLEWAAAAASGVVVYQIKWTPLGEGKAYEISVPGNLGTATLPGLGKHAEYE
ISILAYYRDGARSDTVSLQYTPMSRNPPLNLVLASETPSSLRILWTSPNDNVLHYRLTYA
LASGSGPEKTIIVPGPENHVTLPLLLPGTKYKVMVSAVYSLGESKVVSAIGRTAACPALH
ANNSLPGFDMMEAFGLVEKKYASIKGVSVEPSIFSGTRIYTLFRDVQLMRRASEIHPAAL
PPEHTISFLLRVLPETPREPFALWQITDETFEPLLGVTLDAGRKSLAYFNRDHKAELQEV
TFDLQEVKKIFYGSFHKKAFYFLPTSLHILLGKCFLSFQRDAETCPALASTCTCSLDQPG
PPGPPGPPGTPGRRGIQGEQGTPGPRGEPGPPGQTGPEGPGGQQGSPGTQGLTVQGPVGP
PGLKGEKGDIGHPGLQGHPGHQGPPGRHGLQGPKGMRGFEGTAGFPGPPGPRGFQGIAGA
RGINGEKGSPGDVGPTGLPGPKGERGEKGEPQSLATIYQLVSQACEQLIQTHVLKFDPYL
HENTRPPVPVWEEDVKPGKPGLPGLPNLPGQKGDRGKDGFPGERGRESYPGEIGGLGAKK
QNNNPGLSLQGSPGPHGRNGENASPLGPLTWQAPEAGQMGEDLLGKLGAQDSPGPDDPSR
FSGIAAQVRKSGPSGDCEPSGCHLDSPTDVDLIP
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgacagcccaggtatgcatctgtatctggttggtctgggcctcagtgttggacctcctc
catggacaaggacccagtccagggactagccgactaagactgactgtgctgtctgaagac
cgactccagatgaagtggaaggaatcagaaggaaataccaatggctacaaagtccaagta
aagcccatggcaggagactcagagcaggaagtgatgctgactaccaagacacctaaagtc
acagtagttggactgagcccaaccaaggaatacacactccaaatatttgcactcagtggt
tcccgtgacactctactggccaggcggagatttgtgattgaggatttgaaaagcatctcc
acaggcagaaatagccggaagccatcaggggaaactttggagttcattccttcttcagtg
ggaaatcatgaatttgaccaggttcctgagcttgaagtggcttcaccaacttggagtgga
gtctctcccactttaggtccccagttctattgtgacacctccattcctgtggacatagta
ttcctggtggatggatcctggagcattggccgaagtaacttcaggctcatcagagaattc
ctagctaatgtcatctctccttttcacattgcccaggataaagtccgaattggtttgtcc
caatatagtggagacccccggactgaatggaatctgaattcatttagcaccaaggaagat
attctagaggctattcgaaatctccgttacaagggtggtaacacctttacaggtcttgca
ctgactcacgtactggagcagaatctgaagcttgaagctgggtctcgttctgaggcagtt
aaagtagtcattcttctgactgatggcaagtcccaggatgatgccggacttgctgctcag
gttctgaaagatgtgggcatagacatctttgccattggagtgaagaatgccgatgagtct
gagctgacacacctggcatcccttcccctggatgtcacagttcacaatgtcctggatttc
cctctccttggcaacctgacaagcaggctcatcaggctcctctgttggaagatccaagag
agaagtcgaagcagggacccaggcatcccggctaatagatggccccatccaagccccacg
aacttgattgtatcagaagtgacagcctcaggattccgcctggcctggacccctcctctg
gagcctgccaggaagtacaggatcatataccatccctccagaggtggtacacccagggag
gtcacagtggaaggggctacctcatctgcccagctgctgaatttgacctccaacacagaa
tacttggtcacggtgtttcctgtctataaggatggtgttggagaggggctccgggacatt
gtgactacattaccactgtctcctccaagctcattgaccattttcagcgtggaccacaat
agtatccacttgacctggaagccctcaaataaagctactgagtacctggttcattgcact
tcatcagcttcccttagagagcaggaggcagacgaagaagaggaaggtgggagagaggtg
ctagtgagggatcctgaggttctgctgaaaggtctggctcctggtacagagtatagcatt
gctgtatatgccctctttggggaagaaatcagtgagccccagagcatccaagccaagacc
ttgtctttggatctccccaaacacctgagcttctctgaggtcagccacagctctgttcga
gttcactgggaggcatcattgaggggagttcgcatgtaccatgtgtcctatgtctcactg
gaagggaaccaagctggggagatagatgtctccaggaatgcctcctctgtcaacctggcc
ccactctcctcctccacctcatatattgtcagtgtcacatcagtctacaaagatggggat
tcttccacactcactggacgagtgaccacacgaaaagtcccagccccaagccacttgaag
gtaactgaattgccaggggatgatgtcaggctggagtgggctgctgctgcagcctctggt
gtggtggtctatcagatcaaatggacacccttgggtgaaggaaaggcttatgagatttct
gtcccagggaacctaggcactgccactttgcctggtctagggaagcatgcagaatatgag
atctccatcttagcctattacagagatggggcccgtagtgacacagtgtccctccaatat
actccaatgagcaggaatccacccttgaaccttgtgctagcctcagagactcctagcagc
cttcggatcctctggacatcccctaatgacaatgtcctgcactacagactcacctatgcc
ctggcctctggctctggccctgagaaaacaatcatagttcctggcccagagaaccatgtg
acacttcctctcctgctccctgggaccaagtacaaggttatggtttcagctgtctacagt
cttggtgagagcaaagttgtgtcggccattggaaggactgcggcttgtccagctctccat
gccaacaactctctgccaggatttgacatgatggaagcttttggcctggtggaaaaaaag
tatgcttccataaaaggggtgtcagtggagccctctatctttagtgggactcggatctat
acactcttcagggatgttcagctgatgcgtcgagccagtgaaatccacccggctgccctc
ccccctgagcacaccatcagctttctcctccgtgtgctcccagagacacctagggagccc
tttgcactgtggcagatcactgatgagaccttcgagccccttcttggagtcacccttgat
gctggcagaaagtccctggcctatttcaatcgtgaccacaaggctgagttgcaagaagtc
acatttgacttgcaggaagtgaagaagatattttatgggagcttccacaagaaagctttt
tactttttgcccacatctttacacattttgttgggcaaatgttttctttcatttcagaga
gatgcagaaacctgccctgccctggcttctacctgtacttgttctttggatcagcctggc
cctccagggcctccaggaccccctggtaccccagggaggagaggtatccagggggagcaa
gggactccaggacctagaggagagccaggtccacctggacagactggaccagagggccct
ggaggccagcaggggtcgccagggactcaaggtctcactgttcagggacctgtgggtccc
ccagggctcaaaggtgagaaaggggacattggacatccaggcctacagggccaccctggc
caccaagggccccctgggagacatggcctccaaggtccaaagggaatgaggggatttgaa
ggtacagctggctttccaggacctcctggcccaaggggctttcaaggaatagctggtgcc
agaggcatcaatggggagaagggctctcctggagatgtgggacccacaggacttcctggg
cccaaaggagaacgaggagaaaagggagaacctcagtcccttgcaaccatttaccagttg
gtcagccaggcttgtgagcagttgattcagactcatgtgttgaaatttgatccatatctt
catgagaataccaggcccccagtacctgtctgggaggaggatgtaaagccaggcaagcca
ggcttacctggtcttcctaatcttcctggccagaagggagacagagggaaggatggattc
cctggagaacgtgggagagagagttacccaggagaaataggtggcctgggagccaaaaag
cagaacaacaaccctggtctatcactacaaggatctccaggaccccatggaaggaacggt
gaaaatgcttctcccctgggaccattaacatggcaggctcctgaagcaggtcaaatgggg
gaagatctgctgggaaaactgggagctcaggattctccaggaccagatgacccctcgagg
ttttcagggattgcagcccaggtcagaaagtctggcccctctggggactgtgaaccctca
ggttgtcacctggacagtcctacagatgttgacttgatcccctga
DBGET
integrated database retrieval system
