Monodelphis domestica (gray short-tailed opossum): 100619480
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Entry
100619480 CDS
T01031
Symbol
COL13A1
Name
(RefSeq) collagen type XIII alpha 1 chain
KO
K16617
collagen type XIII alpha
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100619480 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mdo00536
]
100619480 (COL13A1)
Glycosaminoglycan binding proteins [BR:
mdo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100619480 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100619480
NCBI-ProteinID:
XP_007478018
Ensembl:
ENSMODG00000012220
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Position
1:5118308..5335115
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AA seq
761 aa
AA seq
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MVEDKTRQGASDAAATAARAEPCPRPPLPRSCVLLGGVSLFSLALSLLVHFRSAELQSRL
GRLEAEQRRPPPQQPPQPPAWLAAHQMEEAILGRVNQLLEEKLKLHLTRRREPRDTSLRC
NCPPGPPGPAGRPGLPGDKGALGIPGRVGLKGQPGEKGAPGDAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGYPGPKGEMGLSGPKGQPGPPGQKGEKGQCGDYPHREYLSTTLAA
LRSNQIITLKLLPLLNSVRLAPPPSHKKDAPFXGEQGQAGIQGPPGPPGPPGPAGPIGPL
GNPGEPGPMGPPGVSGPPGVDGDPGIQGYHGRKGERGMPGMPGRPGPKGEPGAAGMPGPP
GLPGKRGQRGSAGTPGLPGFLGQKGEKGDAGNGIGGGRGEPGPPGIPGPPGPKGEAGTSG
QTGPPGRPGDKGEIGAPGEQGPIGPKGVKGEPGKGEMVDYNGNINEALQEIRTLALMGPP
GLPGQTGPPGAPGVPGQKGEIGLPGPPGHDGEKGPRGKPGEVGLPGPQGPQGKDGPPGLK
GEKGNVGTPGEKGEAGQVGSPGLDGPTGEKGEPGDQGRPGATGLPGPIGLPGFTGEKGEP
GEKGDPGAAVSGPPGPEGPPGPTGLQGVPGPKGEAGRDGMKGEKGVQGEKGDRGPLGLPG
ASGLDGRPGPPGTPGPVGVPGPAGPKGERGSKGDPGITGPMGAAGLPGLHGPPGDKGNRG
ERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaggacaagactcgccaaggggccagcgacgcggcggcgacggcggcccgggcg
gagccgtgcccccggcccccgctgccccggagctgcgtgctgctgggcggcgtgtccctc
ttctcgctggcgctcagcctcctggtgcactttcggagcgcggagctgcagtcccgcctg
ggccggctggaagccgagcagcggcgcccgcccccgcagcagcccccgcagccccccgcc
tggctggccgcgcaccaaatggaagaggctattttgggaagagtcaaccagctgctggag
gagaaactgaaacttcatttgaccaggcgtcgcgagccccgggatacgtcattgagatgt
aactgtcccccaggaccccctggtcctgcaggaagacctggacttccgggagacaaaggc
gcccttgggatcccgggacgagtgggactcaagggccaaccaggagagaagggagcccca
ggagatgccggaatgtccatcattggtccccgtggtcccccgggtcagccaggcacaaga
ggtttccctggatttccgggccccatcggcttggatggcaaaccgggttatcctggaccg
aagggagagatgggtctctcaggtcccaaaggacaaccgggacccccaggtcaaaaagga
gaaaagggtcagtgtggtgactacccccaccgggaatacctaagcaccaccttggcagcc
ctgcgttccaaccagataattaccctgaagctgctgcctcttctcaattcggtgcggcta
gcgcctccccccagtcataaaaaagacgcacctttttagggtgaacagggacaagcaggc
atccaaggcccccctgggccacctggtccccctggacctgctggacctattggacctctg
ggtaacccaggagagccagggcccatgggaccacctggggtgtctgggccacctggtgtg
gatggagaccctggaattcagggatatcacggacgaaagggggagaggggcatgcccggg
atgccaggaaggccaggacctaagggagagcctggagctgcgggaatgccagggccccca
ggtttgccagggaagagggggcagaggggaagtgctggcacccctggcctgcctggattc
ctgggccagaagggagagaaaggggatgcaggcaatggcattggaggcggccgaggggag
ccagggcccccaggaataccaggaccaccaggaccaaagggagaagctggcaccagtggt
cagactgggcctcctgggaggccaggagacaagggggaaatcggagcacctggagaacag
ggacccattggcccaaagggtgtcaaaggagagccaggcaaaggagaaatggtggattac
aatggaaatatcaatgaagctctccaggagatccgcactttggccttgatgggacccccc
ggactcccaggacaaactggcccaccaggagctcctggtgtaccaggacaaaagggggaa
attggtctgccaggtcctccaggacatgatggggaaaagggacctcgaggcaaaccagga
gaggtcgggctccctggtccccaagggccacaaggaaaggatggacctccagggctaaaa
ggagaaaaaggaaatgtggggacacctggggagaaaggggaggcaggacaagttggttcc
ccgggtcttgatggccccaccggagaaaaaggagaaccaggtgaccaagggagaccagga
gccacaggactgcccggcccaattgggctcccgggatttacaggagagaaaggagaacct
ggagagaagggagatccaggagcagcggtatctggaccaccagggccagagggtccccca
ggacctacaggtctccaaggtgttcctggaccaaagggggaagctggacgtgatggaatg
aaaggagagaagggtgtccagggagaaaaaggagaccgaggtccattgggattgcctggt
gcttcaggtttggacggcaggcctgggccaccgggtactccaggaccagttggagtccca
ggcccagcaggaccaaaaggggaaaggggcagcaaaggagaccctgggatcacaggacca
atgggagcagctgggcttcctggtttgcatggaccacccggtgacaaaggaaatcggggg
gagagggggaagaaaggctctagggggcctaaaggggataagggagaccaaggagcgcct
ggattagatgccccctgcccattgggggaagatggcttgccagtccagggctgctggaat
aagtga
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