Monodelphis domestica (gray short-tailed opossum): 103102881
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Entry
103102881 CDS
T01031
Symbol
TCOF1
Name
(RefSeq) treacle protein
KO
K14562
Treacher Collins syndrome protein
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Pathway
mdo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
103102881 (TCOF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mdo03009
]
103102881 (TCOF1)
Ribosome biogenesis [BR:
mdo03009
]
Eukaryotic type
90S particles
Other 90S particles
103102881 (TCOF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Treacle
Motif
Other DBs
NCBI-GeneID:
103102881
NCBI-ProteinID:
XP_007473938
Ensembl:
ENSMODG00000009538
LinkDB
All DBs
Position
1:343648668..343711490
Genome browser
AA seq
1558 aa
AA seq
DB search
MEMEQALRTPQGNSALVRGNSVASIPTKVSQEKVVTPSPGRLVTKPLTTKDKNPEETSES
SDESESDEDAPQSQGQAQEVKMPHHLSEVPGRVGKTTPTTGKAVTPSSKPNLGVPAKAAM
TQKPEETSESSEESESEEENAKLQRQVKSVPASGTIASPGKGALPVPGKSVTSNLQAKAP
QHESPETSSESSEESESDEDASAPQGQEKSSMKTPQASATPATRTPTPSTLTKVSPRKGT
LQAKTGPPSKTSEVNLPETGSDTSEESESEDNVIVPQRQGKSSGKASQGNATPSKGRSLA
PGKPMTLVPPPRMGPSTPSPRAGTSAMASKPGSSETSSESSEESESEEEILVPQEKKKSP
VKVLQVNAIVTKVAPVPPQGPLGKEALSTTGKSGTLASGVEISSSTETSGSESSEGSDES
ESEEEKTPAPKTQVKPSEKAQAQVSPAPLPKSPLEKGVLNSPEKAAMVTPSAKMAPQAKG
VGPGRSQASSGCSGESDSEGETPTSQGQAKPVVKALQINASPRKLTPLTPISTKGIQGRV
STPAPWKSGILPLQAKAPGPERPAETSGSSEESESEEIPASQGQAKPTLKAPQIDTPPGK
GTPVTPVPTKCSQGRVSTPAPWKSGTVTPQPKVPGPGRPAETSGSSDESESEEEIPAIQA
KPAVKIPQANTPSRKGVSTSTVSTQDSQGKAPSPLKSGTSSLQSKGEVPVKKAWLGRQEE
NLESSEDSESDDSILGPQGQAKPAVKTSPGLGGEKGTTASTPEKSATTIQTTKVDSGSSE
ESSCSSDESESDVVIPVSQKQVKPSVIDKGADKAVMVPVTMVEETSSESSEDTESEETEI
LTSMGQVKTVMRTPQVSAASGQSASSSMEPERPTRPEECSESSEEESDSEDEIIVCQGQV
KPTVKTSEIPAASAEKKGSIPASGKSATPSPQNQATPQAKDTRTEISEESSDRSDESESE
VEIPVSQQQVSSRKKDEKAVASKNNMGKVSPISPVKQLASPCTIRGQKSESNSEQLSPAQ
VIKTPLIFVDPNRSPAGQAAIPMKAKTDSRNRQVSESREQSSSESGDEDVIPDTQYPNLP
SKTPISYICQGPLRSKIRLPLDAVKNAVMKASPLYQRAGSTPSTSKPEESSSDSASEHQG
TGTSQTTCVKSKTARRDKKSKLTGGIQAIAVQDKSSTTTSNSTRNEKENPEAVRAKQTQN
LGLSPKDKIPVKTENPEDSSEEEIIEPSQSILSGYEFPRPSLPTSINAQLEKMPAKQGIT
RVVSADPALQASSKGRPQEGSGDSEKEKQKVEQPHETGRDSKTSVSKLQATKKGSKPEAV
DYKPSSPKEVDICESLLRTKPPSNLPSLVQLQSSGCIENLGFEDAFFKSKAFRLRMLTDL
PEKKKKNTESPKLAKGKKSKSKRKLTEEGPVAKAPKNKKKKLMGEEPKEGEALQEKTPAS
PKEEKREKASGDAKEKKPKEVQSSKKKKEKPEGNVISVKEYGDAPDTKPKKEKKHKKKSD
KKKKDKDKKDEKKKKKKKSISKDPDSASVSLKKEKKKKKKVKQVDGEELNNRIFLTTS
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagcaggcattgagaactccccagggaaactctgccctagtgagagggaac
tctgttgcctcaattcccaccaaagtgtcccaggagaaagtggtcaccccatctcctggg
agattagtgactaaacctctgaccacaaaagacaagaatccagaagagacttctgagagc
agtgacgagtctgagagtgatgaagatgccccacaatcccagggacaggcacaagaagtg
aagatgcctcatcatctcagtgaagtaccagggagggtgggcaagaccaccccaaccaca
gggaaagccgtcactccatcctccaaaccaaatttaggggtgcctgcaaaggcagctatg
acccagaaaccagaggagacttctgagagcagtgaagagtcagaaagtgaagaggagaat
gcaaagcttcagagacaggttaaaagtgtcccagcctctggtaccatagcatccccaggg
aaaggggctcttcctgttcctggtaagtcagtgacttcaaacctccaggccaaggcacca
caacatgaaagtccagagactagttctgagagcagcgaggagtcagagagtgatgaagat
gcctctgcaccacagggacaggaaaaatcatccatgaagactcctcaggccagtgccaca
ccagcaactagaactcctaccccatcaaccctcactaaggtgtccccaaggaaagggaca
ctccaggccaagactggtcctccatccaagacatctgaagtcaatttgccagagactggt
tctgatactagtgaggagtcagagagtgaagacaatgtcatagtgcctcagagacagggg
aaatcatcaggaaaggcttcccaaggcaatgctacaccatcaaaagggaggtctcttgct
cctgggaaaccaatgactttagtccctccacctaggatgggaccttcaaccccctcacct
agagcaggaacttcagccatggcatctaaacctggaagttcagaaactagttctgagagt
agtgaagagtcagaaagtgaagaagagatcttagtaccgcaggaaaagaaaaaatcacca
gtgaaagttctccaagttaatgccattgtgacaaaagttgctcctgtcccccctcaaggg
cccctggggaaagaggccctttctacaactgggaaatcagggactctagcttctggagtc
gagatatcatcatccactgagacatctggatcagagagctctgagggcagtgatgagtca
gaaagtgaagaggaaaaaactccagcaccgaagacccaggtgaagccttcagagaaagcc
caggcccaggtctctccagccccactccccaagagcccattagagaaaggggttctcaac
tcccctgagaaagcagcgatggtcactcccagtgctaagatggcacctcaagccaaagga
gtggggcctgggaggtcacaggcgagttctggttgcagtggagaatctgacagtgaaggg
gaaactcccacatcccagggacaggcaaagccagtggtaaaagctctccaaatcaatgcc
tccccacggaaattgacccctctcacccccatatccactaagggtattcaggggagagtg
tctactccagctccctggaaatcagggatactgcccctccaggccaaagcaccagggcct
gagaggccagcagagacttctggaagcagtgaggaatcagagagtgaggagatcccagca
tcccagggacaggcaaagcccacattgaaagccccccaaattgatacccctccagggaaa
gggacccctgttactcctgttcccactaaatgttctcagggaagagtgtccactccagct
ccctggaaatcagggactgtgaccccccagcccaaagtaccagggcctgggagaccagca
gagacttctggaagcagtgacgaatcagagagtgaggaggagatcccagcaatccaggca
aagccagcagtgaaaattccccaagctaacactccctccagaaaaggagtctccacctcc
acagtctctacccaggactcacaagggaaagcaccatcccccttgaaatcagggacttca
tccctccagagcaaaggagaggttccagtcaagaaagcatggcttgggagacaagaagag
aatctagagagcagtgaggactcagaatcagatgacagcatcctaggacctcagggccag
gcaaagcctgcagtcaagacttctccaggtttggggggagagaaagggaccactgcatca
actcctgagaagtcagcgactacaattcagaccacgaaagtagattctggcagctcagaa
gagagttcctgcagcagtgatgagtcagaaagtgacgtggtaatccctgtgtcccagaaa
caggtgaaaccatctgtcatagacaaaggtgctgataaggcagtgatggtccccgtcacc
atggtagaggagacatcatcagagagcagcgaggacacagagagtgaagaaactgaaatc
ctaacttctatggggcaggtgaaaactgtaatgagaactccccaggtcagtgcagcctca
ggacaatctgcatcttcctcgatggaacctgagaggcctacaaggccagaagagtgttct
gaaagcagtgaggaggaatctgacagtgaagatgagattatagtgtgtcagggacaggta
aaacctacagtgaaaacttctgagatccctgcagcctcagcagaaaagaaagggtccata
ccagcctctgggaagtctgcaactccatccccccaaaaccaagcaacgcctcaagccaag
gatactaggactgaaatatcagaggagagttctgacaggagtgatgagtctgagagcgaa
gtggagatacctgtgtcccagcaacaggtttcatcaaggaagaaggatgagaaagctgtt
gcttctaagaacaacatggggaaagtctctcccatatctccagtcaagcaattggcttca
ccttgtactatcaggggccagaaatcagagagcaacagtgagcaactgtcccctgcccag
gtgattaaaacccctctgatttttgtcgaccccaaccgtagtccagctggccaggctgct
atccccatgaaagccaagacagactcaaggaacagacaagtatcagagagcagagagcaa
agctcctccgagagtggggatgaggatgtgatccctgacactcagtacccgaatcttccc
agtaagactcccatctcctatatatgccaggggccactgaggtcaaaaattaggctccct
cttgacgcagtaaagaatgccgtgatgaaagcatccccactctaccaaagggcaggctct
acacccagcaccagcaagcctgaggagtctagtagtgactctgcctctgagcatcaggga
acaggaacctcccagaccacttgtgtcaagagcaaaacggctaggcgggacaaaaaatct
aagcttactggcggaatccaagccatagctgtccaggacaagtcttcaacaaccaccagc
aacagtacgaggaatgagaaagaaaacccagaggcagtgagagcaaagcagacacaaaat
ctgggtctgtcccccaaggacaaaattccagtgaagacagaaaacccggaggattctagc
gaagaagaaataatagaaccttcccagtctatactttcaggctacgaatttcccaggcca
tctctccccacatccatcaatgctcagctcgagaagatgcctgccaagcaaggaattacg
agagttgtctctgcagacccagctctgcaagcatcttccaaaggaagaccccaggagggg
agtggggactctgagaaggagaaacagaaagtggaacagcctcacgaaactgggagagat
tcaaagacctcagtttccaaacttcaggcaactaaaaaagggtccaagccagaagcagtc
gattataaaccttcctcccccaaagaggtggacatctgtgagagtctcctaagaacaaag
cctccttccaacctcccttctctagttcagctccagagctcaggctgtattgagaactta
gggtttgaggatgcattctttaagtccaaggcctttagactaagaatgcttactgaccta
ccagagaagaagaagaagaatactgaatccccaaagttagccaagggaaagaagtccaaa
tcaaaacgaaagctaactgaggaaggtcctgttgctaaggcccccaagaacaagaagaag
aaactgatgggcgaagagcccaaggaaggagaggctttacaagaaaagacccctgcttcc
cccaaggaggagaaaagggagaaagcaagtggtgatgctaaagaaaagaagccaaaggag
gttcagagctccaagaagaagaaagaaaagccagaaggaaacgtgatctcagtgaaggaa
tatggagatgccccagataccaagcccaaaaaagagaagaagcacaagaagaaatctgac
aagaagaaaaaggacaaagacaaaaaggatgagaagaagaagaagaaaaagaaatccatt
tccaaagatcctgactctgcctcagtatcccttaagaaagaaaagaaaaagaaaaagaaa
gttaaacaagtagatggagaggaactaaataacaggatttttctaaccacatcatga
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