Microchaete diplosiphon: NIES3275_01780
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Entry
NIES3275_01780 CDS
T09944
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mdp
Microchaete diplosiphon
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mdp03016
]
NIES3275_01780
Enzymes [BR:
mdp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NIES3275_01780
Transfer RNA biogenesis [BR:
mdp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NIES3275_01780
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BAY88203
LinkDB
All DBs
Position
210099..212150
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AA seq
683 aa
AA seq
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MEKGTLVEFRVQGDRRLGVVDRPDGKTRWFVVDERSQSHSLAPRQITYTVNGQTFKPSEI
SSFLEQVKPYLDPSSLEVAWELLVEDGETVTPVAMANLLFSQTDAPLCYAAHCLLSDDKL
YFKQKGDAYEPRTTTQVAERKHQLEVEALKARGQQEFLARVEQALAGETVEWQRHDRQRL
EAIEKYAALLADVVRMGVNYDSLSRAYPPPAQVLETMTMLGRAATPQGALQLLVDLGWWS
PNENLFLRRSSIPVQFPSKVLEVAQQRMDSPPSDLDTNRLDLTHLKVYTIDDESTTEIDD
GLSWESLADRRERLWVHIADPTRLLMPEDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLVQGRVCCALSFGIILDETGQVEDFSIHPSLIKPTYRLTYEDVDEMLELGVQAEPEIA
AIAMWAQRRKNWRYAQGAISINMPEAMIKVKGDEISIDILDDSSSRQLVAEMMILAGEVA
ARYGKVHQIPLPFRGQPQPELPPEQELLQLPAGFVRACAMRRCMPKSEMSITPVRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEVLPFSAEQLKEVMMTVTSITQEVTMVERQT
NRYYALEYLRRYPDQVWQVTVLMWLREDSNLALILLEDLGLQLPMSFRRSVNLGEQLLVK
VSLADPQKDMIHFQEIIYQEALN
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttagggttcaaggcgatcgccgtctgggagtcgta
gatcgcccagatggaaagacccgctggtttgtggtagatgaacgcagtcaatcccacagc
ctcgcgcctagacaaattacttatactgttaacggacaaaccttcaagccgtctgagatt
agcagctttttagagcaggtaaagccgtatctcgacccatctagcttagaagttgcctgg
gaattattggttgaggatggagaaacagtcactccagtggcaatggcgaatctgctgttt
tctcaaacagatgcaccgctttgttacgccgcccattgcttgttatcagacgacaaactt
tatttcaagcaaaaaggcgatgcgtatgaaccacggacaaccactcaggtagcagaacgc
aaacaccagctagaagtagaagccctcaaagctaggggacagcaggaatttttagcgcgt
gtagaacaagccttggcaggcgaaactgtggaatggcaacgtcacgatcgccagcgttta
gaagcaattgaaaaatatgcagctctactagctgatgtggtacggatgggagtaaattat
gattctctgtctcgggcttatccaccaccagcacaagtattagaaaccatgactatgctg
ggacgtgccgcaactccccagggcgcattacaacttttggtagatttgggttggtggagt
cccaatgaaaacttattcttgcgtcgttcgtccattcccgttcagtttcctagcaaggta
ttagaagtggcgcagcagcgtatggattccccgccgtccgatctagatacaaatcgccta
gatttgactcacctgaaggtgtacacaattgatgatgaaagtactacagaaatcgacgat
ggtctaagttgggaatcgctagctgataggcgagaacgtctgtgggtacatattgccgat
cccacccgcttattaatgccagaagatgaattagacctagaagccaggaaacggggaagt
acagtttatttgcctactgggatgattcccatgttccctgaagttttggcaactggcccc
atgagtctggtacagggaagggtgtgttgtgccctgagttttggcattattttagatgag
actgggcaagtagaagattttagtattcatcccagcttaattaagccgacataccgcctc
acctacgaagatgtcgatgagatgctggaattaggtgtacaagcagaaccagaaattgct
gcgatcgccatgtgggcacaacgacgcaaaaattggcgttacgcccaaggtgcgattagc
atcaatatgccagaggcgatgatcaaagtcaaaggcgacgagatcagcattgatatttta
gatgattcctcatcacggcaactcgtagcggaaatgatgattttagctggtgaagtcgcc
gcacgctacggtaaagttcaccaaatacccttaccttttcgcggtcagccacagccagaa
ttgcccccagaacaggaattactccagttaccagctggatttgttcgcgcctgtgccatg
cgtcgctgtatgcccaaaagcgaaatgagcattaccccagtgcgtcatgctggcttaggt
ttggatacctatactcaagcgacttctccaatccgtcgctacagcgatttgctaactcac
tttcaactcaaagcccatttgcgcggtgaagttctacccttctccgccgaacagcttaaa
gaagtgatgatgaccgtcaccagtatcacccaagaagtgacaatggtagaacggcaaact
aatagatattacgctttagaatatttacgtcgttacccagatcaagtttggcaggtaaca
gttttgatgtggctgcgagaagatagcaatttagccctaattctcttagaggatttaggt
ttacaactaccaatgtctttccgtcgttcggtaaatttaggcgaacagttattagtaaaa
gttagccttgccgacccgcaaaaagatatgattcactttcaagaaatcatttatcaagaa
gcacttaattaa
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