Microchaete diplosiphon: NIES3275_03850
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Entry
NIES3275_03850 CDS
T09944
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mdp
Microchaete diplosiphon
Pathway
mdp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES3275_03850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdp03021
]
NIES3275_03850
03400 DNA repair and recombination proteins [BR:
mdp03400
]
NIES3275_03850
Enzymes [BR:
mdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES3275_03850
Transcription machinery [BR:
mdp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES3275_03850
DNA repair and recombination proteins [BR:
mdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES3275_03850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
BAY88410
LinkDB
All DBs
Position
469487..470434
Genome browser
AA seq
315 aa
AA seq
DB search
MAQFQIECVDSNTEESRNHYSKFVLEPLERGQGTTVGNALRRVLLSNLEGTAVTAVRIAG
VSHEFATVPGVREDVLEILMRMKEVILKSYSSQPQIGRLLVNGPTTVTAAHFDLPSEVEI
IDPTQYVATLAEGGKLEMEFRIEKGKGYRTVERGREEATSLDFLQIDSVFMPVRKVNYSV
EEARGDGSITKDRLLLEVWTNGSISPQEALSSAAGILVDLFNPLKDISLEPTDTGSDIPD
DPTAQIPIEELQLSVRAYNCLKRAQVNSVADLLDYTQEDLLEIKNFGQKSAEEVVEALQR
RLGITLPQERSSKHS
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcagtttcaaattgaatgtgtagattctaatactgaggaaagtcgaaaccattac
agtaaatttgtcctcgaacctctagaacgcggtcaaggtaccacagttggtaacgcctta
cgtcgcgttttactgtcaaatctagagggaaccgcagttacagcagtgcggatagcaggc
gtttcacacgagtttgccacagttcctggtgtgcgggaagatgtcttagaaatcttgatg
agaatgaaagaagtcattctcaaaagctattcatctcaacctcaaattgggcggttactc
gtaaacggccctacaacagttacggcagcacattttgatttgccaagtgaagtagaaatt
atcgatccaactcagtatgtagctaccttagcagaaggtggcaagttggaaatggaattt
cggatcgagaaaggtaagggttatcgcactgtagagcgaggacgcgaagaagccacatct
ttggacttcttgcaaatcgactccgtgtttatgccagtgcgaaaagtcaactatagtgtt
gaagaagcccgtggggatggctctatcactaaagaccgattactgttagaagtctggaca
aatggtagtatttctccacaagaagcactatcatctgctgccggaattctggtagatcta
tttaatcccctcaaagatatctcactcgaacctaccgatacaggttcagatatcccagac
gacccaaccgctcaaattccgatcgaagaattgcaactttctgtacgggcatataactgt
ctcaagcgagcacaagttaactctgtagccgacttgttggattatacccaagaagacttg
ttagaaattaaaaacttcggtcagaagtcagcggaagaggtagttgaagctttacagcga
cgcttaggcatcaccttgccccaagaaagaagctctaaacacagctaa
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