Microchaete diplosiphon: NIES3275_06030
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Entry
NIES3275_06030 CDS
T09944
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mdp
Microchaete diplosiphon
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdp03032
]
NIES3275_06030
03400 DNA repair and recombination proteins [BR:
mdp03400
]
NIES3275_06030
Enzymes [BR:
mdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NIES3275_06030
DNA replication proteins [BR:
mdp03032
]
Prokaryotic type
DNA Topoisomerases
NIES3275_06030
DNA repair and recombination proteins [BR:
mdp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NIES3275_06030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Toprim_4
TPD52
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BAY88625
LinkDB
All DBs
Position
complement(750370..752553)
Genome browser
AA seq
727 aa
AA seq
DB search
MPKRLLVVESPGKVKKLSQILGSEWIVRASCGHIRELSNEGEDSLGFTMEGSHVQCRYVP
RDQQAKETIQQLKAAVKQVQEVVLATDPDREGETIAWHLKEALGLRQPKRVVYTEITEAA
VRTAIAHPRELDTNLVGAGLCRDCLDKLVGYKGSPLVWALNNGAKSVGRVQSATLHLICQ
REREIQTFVPQDYWSVWVDYAEGFRAFYKGMVNAPKEAAKEEGEVNDDAAVNSTQAPEST
RVLSEAEANRLVEEARRHPHKVVQFEGKIVNRQPPPPFITSTLQQAAGSRLRFAPEKTMQ
VAQKLYEAGLITYMRTDSVMLSPEFCDSARKWLEQNDPQNVPQKTTKHRSNKTAQEAHEA
IRPTDVFRPSVQLRLELTEDEFNLYVLIWKRAIASQCRAAQLRKTLVITQSGDILWQARG
QVVEFLGYARYWPNLSKDSILPNLQQGQMLTLENAGHEKKQTQPPPRYSEPKLVQLMERK
GIGRPSTYSPTIATLKKRGYVQLAKDSLQPTTLGLEVDAFLQKALPDLLETEFTAKMEDA
LDAIASGKQQWQQYLTKWNENYFAPALAKAKTIVVTAATGVKNYPVTERKFETSRTRCPQ
CKNHLAKIPSSKVKKKYFLKCVSGCENIVLFWSEYSKSWEAPRSQAAKETKETKEISPQK
PKAAITKYSCPVCHKPLEEYSYVKDGQNKKMLRCSNPQSRNDKKHKDIAYFSTQKGWWSP
KLGELKG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaacgccttctggtggttgaatctccgggtaaagtgaaaaagctcagtcaaatt
ctgggttctgagtggattgtacgcgctagttgcggtcacattcgcgaactgagtaatgag
ggtgaggattctctgggttttacgatggaagggagtcatgtgcagtgtcgctatgtcccc
cgggatcaacaggctaaggaaacgattcagcagttaaaggcggcggtaaagcaagtacag
gaagttgttttagctacagatccagatagagaaggggaaaccattgcttggcatctcaag
gaagctttgggactgaggcaaccaaaacgggtggtgtacactgaaattacagaagcagca
gtcagaactgcgatcgcacatcctagagaattagatacaaatttggtaggggcgggattg
tgccgcgattgtttagataagctggtaggttacaagggtagtcctttagtttgggcgttg
aataatggggcgaaaagtgtcgggagagtccaaagtgctaccttacacttaatttgtcag
cgcgagagagaaattcaaacttttgtaccgcaagattattggagtgtgtgggtagattac
gctgaaggcttccgcgctttttacaaagggatggtgaatgcgcccaaggaagcagcgaag
gaagaaggggaagtgaatgacgatgcggcggtgaatagcacccaagcaccagaatctacc
cgtgtgctgtcggaagcggaagcaaatcgcctagtagaagaggcgcgccgccatccgcac
aaagtggtgcaatttgaaggcaaaattgttaaccgccaaccaccaccaccatttatcacc
tctactttacagcaagctgccggttctcggttgcgctttgccccagagaagacaatgcag
gtagcacaaaagctctatgaagctgggctaattacttatatgcgaacagattcagtgatg
ctcagtccggagttctgtgatagcgcccgtaagtggttggagcaaaacgatccgcaaaat
gtcccccaaaaaactaccaaacatcgcagtaataaaactgctcaggaagcccatgaagcg
attcgcccgacagatgtgtttcgcccttctgtgcagttacgcctagaactaaccgaagat
gagtttaacttgtatgtcttaatttggaaaagagcgatcgcatctcaatgtcgagccgca
caactgcgaaaaactctagtaattacccaatctggggatattctctggcaagcaagaggg
caagttgtggaatttttaggctatgcgcgctactggcctaacctgagtaaagatagtatt
ttgcctaatttacaacaagggcaaatgctgactttagaaaatgctggacatgagaagaaa
caaacccaaccgccaccgcgttacagcgaacccaaattagtgcaattaatggagcgtaaa
ggcattggtcgtcctagtacctattctcccacaatcgccacactgaaaaaacgcggttat
gtgcagttagcgaaagatagtttacagccaaccaccttggggttagaagtcgatgccttt
ttgcagaaagccttacccgacttattagaaaccgaatttaccgccaaaatggaagatgcc
ctagatgcgatcgcatctggtaaacaacagtggcagcaatatctcaccaaatggaacgag
aattattttgcaccagctttagccaaagccaaaaccatcgtcgtgactgcggcgactggc
gtgaaaaattatcctgtcaccgaacgcaaatttgaaacttcccgcactcgttgcccacag
tgcaagaatcatttagccaaaattcccagtagtaaagttaaaaagaaatatttcctcaaa
tgcgtcagtgggtgtgagaatatcgtgctgttttggagcgaatatagcaaaagttgggaa
gcaccccgttctcaagctgcgaaggaaacgaaggaaaccaaagaaatcagcccccaaaaa
cccaaggctgcaattaccaaatactcctgtccagtatgtcacaagcccttagaagagtac
agttatgtcaaagatggacagaacaagaaaatgctacgctgttccaacccccaatcccgc
aacgataaaaaacacaaagatatcgcctacttcagcacccagaaaggttggtggagtccg
aagttaggagagttgaagggatga
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