Microchaete diplosiphon: NIES3275_35830
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Entry
NIES3275_35830 CDS
T09944
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mdp
Microchaete diplosiphon
Pathway
mdp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES3275_35830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdp03021
]
NIES3275_35830
03400 DNA repair and recombination proteins [BR:
mdp03400
]
NIES3275_35830
Enzymes [BR:
mdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES3275_35830
Transcription machinery [BR:
mdp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES3275_35830
DNA repair and recombination proteins [BR:
mdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES3275_35830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
BAY91559
LinkDB
All DBs
Position
complement(4610919..4612796)
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AA seq
625 aa
AA seq
DB search
MRNAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDSQ
LQGVEVGIGAEALLHLLADINLEQEAESLREEIGNAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMAVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLNIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLE
EVIEGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGKPIITPSQDMVLGAYYLTAENPGATKGAGRYFASLDD
VIMAFQQEQIDLHAYIYVRFDGEVESDGPDTEPLEVTDNSDGTRTLLYKYRRVREDAQGN
LLSQYVRTTPGRVIYNKAIQEALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacgcccaaaccaatcagtttgactacgtaaaaatcggcttggcatcaccagaa
cgcattcggcagtggggcgaacgcactttgcctaatggtcaggttgtgggtgaagttacc
aagccagaaacaatcaattaccgtactctcaagccagagatggacggcttattttgcgaa
cgcatctttggcccagcaaaagattgggaatgccattgcggtaaatataaaagagttcgt
catagaggcattgtttgcgaacgctgtggtgtagaagttaccgagtcacgggtgcggcgg
caccgcatgggatatattaaactcgctgccccagttgctcacgtttggtacctcaaaggg
attcctagctatatttccattttgctagatatgcccttgcgggatgtagaacaaattgtc
tatttcaactcttatgttgttcttagccctggtaatgccgaaaccttaacctacaagcag
ctactcagtgaagaccagtggctagaaattgaagaccaaatttatagtgaagattcccag
ctacaaggtgtagaggtaggtattggtgctgaggccctgttacacttactcgctgatatt
aatttagagcaagaagctgaaagcctccgggaagaaattggcaatgctaaaggacaaaag
cgagccaagttaattaaacgcctgcgggtaattgacaacttcatcgctacgggttctaaa
ccagagtggatggtaatggcagttatccctgtgattcctccagacttacgcccaatggtg
caactcgatggtggtcgatttgccaccagcgatttgaatgatttgtatcgccgagtcatt
aaccggaataatcgtctggcacgcctacaagaaattttggcaccagaaattattgtgcgg
aacgaaaagcggatgttgcaagaggcagtagacgctttgattgataacggtcggagagga
cgcactgtagtcggagccaataaccgtcccttgaagtccttatctgacattattgaaggt
aagcaagggcgcttccggcaaaacttgttaggtaaacgggttgactactcgggtcgttct
gtaattgtggtggggccaaaattaaatatccaccagtgcggtttgcccagagaaatggca
attgagctatttcagccctttgtgatcaatcgcttgattcgcagcggtatggtcaacaac
atcaaagcagcgaaaaaactcatctctcgtaacgatcccagcgtgtgggatgtactggaa
gaagtgattgaaggacaccccgtactgctgaaccgggcaccgacactgcaccgcttaggg
attcaggcatttgagccaattttggtggaagggagagctattcaactccatcctttagtc
tgtccggcatttaacgctgactttgacggtgaccaaatggcggtacacgtacccttgtct
ttagaaagtcaggcagaagcgcggttattaatgctggcttctaacaatatcttgtcgcca
gctaccgggaaaccaattattacacccagccaagacatggtattgggagcatattattta
actgcagaaaaccctggtgcaaccaaaggggcaggccggtattttgcttctcttgacgac
gtaattatggcgttccagcaagagcaaattgacttgcacgcctatatctacgtgcggttt
gatggagaagtagaatcagacgggcccgacacagaaccactggaagtgacagacaacagc
gatggtactcgaactttgctgtataaataccgccgagtcagagaagacgctcaaggaaat
ttattgtctcagtatgtccgcacgacaccaggccgcgttatttacaacaaagcaattcag
gaagcactggcaagctaa
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