Microchaete diplosiphon: NIES3275_38200
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Entry
NIES3275_38200 CDS
T09944
Name
(GenBank) ribonuclease E and G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mdp
Microchaete diplosiphon
Pathway
mdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES3275_38200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdp03019
]
NIES3275_38200
03009 Ribosome biogenesis [BR:
mdp03009
]
NIES3275_38200
Enzymes [BR:
mdp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NIES3275_38200
Messenger RNA biogenesis [BR:
mdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIES3275_38200
Ribosome biogenesis [BR:
mdp03009
]
Prokaryotic type
rRNA processing factors
NIES3275_38200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF6863
Motif
Other DBs
NCBI-ProteinID:
BAY91793
LinkDB
All DBs
Position
complement(4895985..4898096)
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AA seq
703 aa
AA seq
DB search
MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLKLKRTAAAITELLAPQQKVLVQVMKEPTGTKGPRLTGNITMPGRYVV
LMPYGRGVNLSRRIKSESERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIIEDLEVLQK
QWEAIQQEAQSTRAPALLNRDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSG
GQTPQGLLIDHHRDRSPILEYFRINAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQMRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKAL
KADKARPQIAQLTELGLVELTRKRQGQNIYELFGETCPTCGGLGHTVRLPGELESRLPTI
PTEVPERFIPLPNREPREAREPREAREPRQPVARIPDPRETYDGFGDTFDNDSDLGALNL
INHPSYQELSDHNKRRTRTRRSRIGIGAPNGKDEGRIVNNPLAFVNDPDLDLDADNELAP
APEIPPPSLNKQGWSDRGERAKVTKVEPIKPVVEPPEIRTVEMTHEEQDVFALMGVSPLV
KLDREVKNPKSVIINIVQPGQLPTTESTSDSTPTEKVSTAVSTIKVPTSQLEVEPKPSPQ
PVIESPGFTAIAEEPEATESNSTAASRRRRRRSSAIDDNNEDS
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagcaaattatcatcgcggaacagcatcaaattgctgctgtattttcggaagat
caaatacaagaacttgttgtagccaccggtcatcaccaaattggtgatatttacttagga
gtggtagaaaatgtactaccaggtattgatgcagcttttgtaaatattggcgatccagag
cgtaacggctttattcacgtcactgatttggggccgttaaagctgaagcggacagccgcc
gcaatcacagaattattagcaccacaacaaaaagtgttggtgcaggtaatgaaagagcca
acgggcacaaaagggccaaggctcacaggtaatatcactatgccaggacgctacgtagtc
ctgatgccctatggtagaggtgtaaatttatctcggcggattaaaagtgaaagcgagcgt
aaccgtctgcgggcattagcaattttgatcaaacccgcaggtatgggtttattagtccgc
acagaagccgaaggtaaaccagaagaagcaattatcgaagatttagaagtattgcagaaa
cagtgggaagccattcaacaagaagcacaatccacccgggccccagcattgctgaatcga
gatgatgactttatccaacgcgtcttgcgagatatgtacggcgcggatgtgaatcgcatt
gtagtcgattctagtactggtttaaaacgcgttaagcagtatttacaaaactggagtggg
ggtcaaacaccgcagggattgttaattgaccatcatcgcgatcgctcaccaattttagaa
tacttccggattaacgccgcgattcgagaagccctcaaaccaagagtagacttaccttct
ggtggctatatcatcattgagccaaccgaagccttaacagtcatagatgttaactccggc
tcctttacacgttccgcaacagctagagagacagtactgtggactaactgcgaagccgct
acagaaattgcccgacagatgcgtctgcggaatattgctggggtgatcgtggtcgatttc
attgacatggaatcacgacgcgatcaactgcaagtactggagcattttaacaaagccctg
aaagcagacaaagctcgtccccaaattgctcaactcactgaactgggtttagtagaactc
acccgtaagcgccaaggtcaaaatatttacgaattatttggtgaaacttgcccgacctgt
ggaggtttagggcatactgtgcgtctaccgggagaactagaaagtagattgcccaccata
cccacagaagtaccagaacgctttatccctctgccgaatagggaaccaagagaggcgcga
gaaccacgggaagccagagaacctcgtcagccagtggcccgcattcccgatccacgggag
acctacgatggatttggcgatacatttgataacgattctgacttgggtgccctcaactta
atcaatcatcccagctatcaagaactgagcgatcataacaagcgccgcacccgcacccgt
cgtagtcgcattggtattggtgcgcccaatggcaaagatgaaggacggattgtcaacaat
ccactcgcttttgtcaacgaccccgacttagacttagatgctgataatgaactagcgcca
gcaccagagataccaccaccaagcttgaataaacaaggttggagtgatcgaggagaacgg
gctaaagttaccaaagtagaaccaatcaaaccagtggtagaaccaccggaaattagaact
gtagaaatgacccatgaagaacaagatgtttttgctttgatgggtgtttctcccttggtg
aagttggatcgggaagtgaaaaatccgaaatcagtaattatcaatattgtgcaaccagga
caacttcccactacagaatctacctctgattctacccccacggaaaaagtcagcactgct
gtcagcaccatcaaagtaccgacatcacaacttgaagtagagccaaaaccatcaccccaa
ccagttattgaatcaccaggatttactgcgatcgcagaagaacctgaagccacggaatct
aatagtactgctgctagccgtcgccgtcgtcgtcgctcctcggccatcgacgacaacaat
gaagacagctaa
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