Microchaete diplosiphon: NIES3275_44570
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Entry
NIES3275_44570 CDS
T09944
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mdp
Microchaete diplosiphon
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdp03032
]
NIES3275_44570
03400 DNA repair and recombination proteins [BR:
mdp03400
]
NIES3275_44570
Enzymes [BR:
mdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NIES3275_44570
DNA replication proteins [BR:
mdp03032
]
Prokaryotic type
DNA Topoisomerases
NIES3275_44570
DNA repair and recombination proteins [BR:
mdp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NIES3275_44570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
LIM_FHL2-3_N
Motif
Other DBs
NCBI-ProteinID:
BAY92422
LinkDB
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Position
5693445..5696129
Genome browser
AA seq
894 aa
AA seq
DB search
MSTLVIVESPTKARTIRNYLPSGYRVEASMGHVRDLPQSASEIPTAVKAEKWAQLGVNVD
ADFEPVYVVPKDKKKVVTQLKDALKEADELILATDEDREGESISWHLYQLLKPKVPTKRM
VFHEITQEAIKKALKNCRNIDEQLVRAQETRRILDRLVGYTLSPLLWKKIAWGLSAGRVQ
SVAVRLLVTKERQRRAFHEGTYWDLKAYLEKEKAPFTAQLVTLGGTKIANGSDFDPTTGQ
ISAGRNVVLLTEADALALQERLSGKTWNVREVEERPVTRKPAPPFTTSTLQQESNRKLRL
SARDTMRIAQNLYEQGYITYMRTDSVHLSDQAIAAARSCVESLYGKQYLSPQPRQYTTKS
KGAQEAHEAIRPAGSTFRTPQETGLSGRELAVYDLIWKRTVASQMADSRQTQVSIQLQVE
DAGFRASGKRIDFPGYLRAYVEGSDDPDAALEDQEVILPSLQVGDHPDCKNLEAIAHETQ
PPARYTEATLVKTLESEGIGRPSTYASIIGTIIDKGYAQLVNNALIPTFTAFAVTDLLEK
HFPDVVDPSFTSKMEQTLDDIATGEAKWLPYLKEFYLGDKGLETLVKERENQIDATKART
VELENLAAKVRIGKYGPYIEVENGEGVVTASIPKDLTPADLDPKQVEVLLRQKTSGPDQL
GRHPETGEPIYVKIGAYGPYVQLGDKSDENPKPKQASLPKGVTPETVTLDMAVGLLALPR
TLGVHPETGGKIQASLGRFGPYIVHDQGKEGKDYRSLKAADNVLTVTLERALDLLAEPKK
GRSSSSSKSKAALRELGTHPDDDTPINIYDGPYGPYIKNGKTNVSLPEGQSVEDMTLEKA
LELLASKASSGKSTRKSSKSTTAKTKSTTTKTKSTTKSTSKASASSAKKNDAED
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactctcgtcattgtcgaatctccaaccaaagctcgtaccattcgcaactacctc
ccatcaggctatcgggtggaagcgtctatgggtcatgtacgtgacctaccccagtcggct
agcgaaattcccaccgctgtcaaagcagaaaaatgggcacagcttggggtgaatgtagat
gccgactttgagccagtgtatgttgtccccaaggataaaaagaaagttgtcactcagctc
aaagatgctctcaaagaggctgatgagttgattctggcgacggacgaagaccgggaaggt
gaaagtattagttggcatttataccagttgctcaagccaaaagtgccgacaaagcggatg
gtgtttcacgagattacccaagaggcgattaaaaaggctttgaaaaactgccgcaatatt
gatgagcagttagttcgcgcccaagaaacgcgccggattttggatcggctggtgggttat
actctgtctcctctgctttggaaaaaaattgcctgggggttatctgctggacgcgtacaa
tctgtagcggtcaggcttttggtgacaaaggaacgccaacgccgcgctttccatgaaggt
acttactgggatttaaaggcttacctggaaaaggaaaaagctccatttacagcccagttg
gtgacgttgggaggcacgaaaatagcaaatggcagcgattttgaccccacaaccggacaa
atatcggctggtcgcaatgtagttttgctgacagaagcagatgcattagcactgcaagaa
cgcctgagcggtaaaacctggaatgtcagagaagtagaagaacgtcctgtaacgcgtaaa
ccagcgcctccttttactacctcgacactgcaacaggaatctaaccgaaaattgcgcctc
tcagccagagacacaatgcgaattgcccagaatttgtacgagcaagggtacattacctat
atgcggacagattcggtgcatttgtcagaccaggcgatcgcagctgcacgcagttgtgta
gaaagtctttacggcaaacaatatctcagccctcaacccagacaatacaccactaaatct
aaaggcgcacaagaagcacacgaagccattcgtcctgcgggtagtactttccgcactccc
caagaaactggtttaagcggtcgagaactagctgtttatgacttaatttggaagcgtact
gtcgccagccaaatggctgactcaagacaaacccaagttagtatccagttgcaagtcgaa
gatgcagggttccgtgcttctgggaagcggattgacttccccggctatttacgcgcttac
gtcgaaggttccgacgatcccgatgctgcattggaagaccaagaagtaattttgccgagt
ttgcaagtgggagatcatccagattgcaaaaacttggaagcgatcgcccatgaaactcaa
ccaccagctaggtacactgaagctactctggtaaaaaccttagaaagtgaagggattggt
cgtcccagtacctacgccagtattattggcacgattattgataaaggttatgcccaatta
gttaataatgctctgattcccaccttcacggcgtttgctgtgactgacctattggaaaaa
catttccctgatgtagtcgatcccagctttacctccaagatggagcaaaccctggatgac
atcgctacaggggaagctaagtggttaccctacttaaaggaattttatctgggagacaaa
ggtttagaaaccttagtcaaagaacgggaaaatcaaattgatgctactaaagccagaaca
gtagaactagaaaatttagcggctaaagttcgtataggtaaatacggcccttacatcgaa
gtagaaaacggtgaaggtgtagttacagcttcgattcctaaagatttaaccccagcagac
cttgaccccaaacaagttgaggtattgctacgacaaaaaacctctggccccgaccaactc
ggtcgccatcccgaaactggggaaccaatttatgtcaaaattggcgcttacgggccttat
gtacaattgggcgataagtctgatgaaaatcccaaacctaaacaagcttccttacctaaa
ggtgtaacaccagaaacagttaccctggatatggctgttggtcttttagccttaccccgg
acattaggagttcatcccgaaacaggtgggaaaattcaagcgagtttaggacgctttggc
ccttacattgttcatgaccaaggtaaagaaggcaaagactaccgttctttaaaagcggcg
gataatgtcttaaccgttactttagaacgtgctttagatttattagccgaaccgaaaaag
ggacgtagttccagcagtagcaaatccaaagctgccttacgtgagttgggtacccatccc
gatgatgatacaccaatcaacatctatgatggcccctatggcccttacattaaaaatggc
aaaactaatgtcagtcttccagaaggccaatctgtagaagatatgactttggagaaagca
ttagaattgttggctagcaaagcatcctctggaaaatcgactcgcaaatcgagtaaatct
acaactgctaaaactaagtcaacaactactaaaactaagtcaaccactaaatcaacttct
aaggcttcggctagtagtgctaaaaaaaatgatgctgaggactag
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