Microchaete diplosiphon: NIES3275_53450
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Entry
NIES3275_53450 CDS
T09944
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mdp
Microchaete diplosiphon
Pathway
mdp03410
Base excision repair
mdp03430
Mismatch repair
mdp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NIES3275_53450
03430 Mismatch repair
NIES3275_53450
03440 Homologous recombination
NIES3275_53450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdp03400
]
NIES3275_53450
DNA repair and recombination proteins [BR:
mdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NIES3275_53450
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NIES3275_53450
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES3275_53450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAY93306
LinkDB
All DBs
Position
complement(6836173..6838296)
Genome browser
AA seq
707 aa
AA seq
DB search
MLDIARSETSKPRRRLPNQRWQIYPQKDEFAQKLSNYNNISPIVSQLLINRGIETLDAAQ
AFLEPESLILPAPLEEFPDLALSVELLQNAIASSEKIAICGDYDADGMTSTALLLRNLRA
LGAKVDYAIPSRMHDGYGINKRIVEEFHSEGVGIILTVDNGISAVEPIARARELGLKVIV
TDHHDIPQQLPPANAILNPKLIAESSPYRGVAGVGVAYILAVSLAQQLGETRGLIQPMLA
LFTLGTIADLAPLTGVNRRWVKRGLQLLPKSHLPGIQALIQMAGVQAREAIQNSKFKIQN
SEEIDTNPKSKIQNPKSLKPEDIGFKLGPRINAIGRIGDPQIVIDLLTTDDMGIALERAM
QCESVNQQRQEMCEQIEQEAIAYVETEFITSLPQDRVLVVVQPNWHHGVIGIVASRLVER
YGVPVFIGTYEDETHIRGSARGIPEFNVFEALQACHDLLGKFGGHKAAGGFSLPAPNLAK
LRSRLIEFANQCLEPQHLKPLLKIDTEVNFSEINHQLYQQLNTLHPCGIDNPDPVFWTPN
VQVVEQQIVGKGHIKLTLAQTIEQQQYKIKAIAWRWRDYYPLPSRVDVAYKLRENHFNGN
TAIEMELIGVRLTTQSHLFFRSSTRPLTTSFEYKQRHYTCGIFQQNSLPELRIKNSEGKV
LVMQPGHTIGLLGNSREDAKEVDVCEPQYDNIIQAALQALSVLSSKS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacattgctcgttcagaaacatcaaaacctcgcaggcgcttaccgaatcagcgt
tggcaaatttatccccaaaaggacgaatttgctcaaaagctgtctaattacaacaatatc
tctccaattgtcagccagcttttgattaaccggggtattgaaaccctagacgcagcacaa
gcctttttagaaccagaatcgttaattttacctgcaccactagaagaatttcccgattta
gcgctgagtgtagagttattgcaaaatgcgatcgcctcatcagaaaaaattgctatttgc
ggtgattatgatgcagatgggatgactagcacggctttactgttgcggaatctccgagct
ttgggtgcgaaagttgattacgctatccccagccggatgcatgatggttatggcattaat
aaacgaattgtcgaagaattccacagcgaaggtgtggggataattctcactgttgataat
gggatttccgcagttgaacccatagctagagccagagaactaggattaaaggtaattgtc
accgaccatcacgacattccgcaacaattaccaccagctaacgccattctcaaccccaaa
ttaatcgctgaatcttcaccctatcgcggtgttgcgggtgtaggtgtcgcctatatcttg
gcggtatctctcgcacaacagctaggcgaaactagagggttaatccagccgatgcttgca
ctatttaccttaggaacgatcgcagatttagcacccttaaccggcgtaaaccgtcgctgg
gtaaaacgcggtttacaactcctacccaaatcccatttacctggaatacaagccttaatt
caaatggctggagttcaagcgagggaagcaattcaaaattcaaaatttaaaattcaaaat
tcagaagaaattgataccaatccaaaatccaaaatccaaaatccaaaatcgttaaagcca
gaggacattggctttaaactggggccgagaattaatgcaattggtagaattggcgatccg
cagattgtgattgatttgctgactacagatgatatggggatagcgctggaaagagcaatg
cagtgcgaatctgtaaaccaacagcgccaggaaatgtgcgagcaaattgaacaagaagcg
atcgcttacgtagaaactgaatttatcacatcactcccccaagatagagtattagttgtt
gtgcaaccaaactggcatcatggtgtcattgggattgtcgcttctcgtttggtggaacgc
tacggtgtgccagtatttattggtacatacgaagatgaaacccatattcgcggttcagct
aggggaattcccgaatttaacgtatttgaagccttacaagcttgtcatgacttactaggt
aaatttggcggacataaagccgccggcggattttctttaccagcgccaaatttagcaaaa
ctgcgatcgcgtttaattgagtttgcaaatcaatgtctggaaccccagcacctcaaacca
ctgctaaaaattgataccgaagtcaattttagtgaaatcaatcaccagctttatcaacag
cttaatactctgcatccttgcggtatcgataaccctgatccagtgttctggactccgaat
gtgcaagtagttgagcaacaaatagtcgggaaaggtcatattaaactcacactagcccaa
actatcgagcagcaacagtataaaattaaggcgatcgcttggcgttggcgcgactactat
cccctaccttcgcgagtggatgtagcttataaactgcgagaaaatcattttaatggcaat
accgctattgaaatggaactaataggtgtgcggctaacaacgcaatctcacctgtttttc
cgttcctcaactcgtcctttaacaaccagctttgagtacaaacagcgccattacacttgt
ggtatctttcaacaaaattccttaccagaattaagaattaaaaattctgaaggcaaagtc
ttagtgatgcaaccagggcatacaatcggtttgctaggtaacagtcgtgaagatgccaaa
gaggttgatgtctgtgaaccacaatatgacaacatcatccaagctgcgcttcaggctttg
tcagtgctgagttccaagtcctga
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