Microchaete diplosiphon: NIES3275_54850
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Entry
NIES3275_54850 CDS
T09944
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mdp
Microchaete diplosiphon
Pathway
mdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES3275_54850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdp03019
]
NIES3275_54850
03016 Transfer RNA biogenesis [BR:
mdp03016
]
NIES3275_54850
Enzymes [BR:
mdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NIES3275_54850
Messenger RNA biogenesis [BR:
mdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NIES3275_54850
Transfer RNA biogenesis [BR:
mdp03016
]
Prokaryotic type
tRNA degradation factors
NIES3275_54850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
Amidase
KH_NusA_1st
aRib
Motif
Other DBs
NCBI-ProteinID:
BAY93446
LinkDB
All DBs
Position
complement(7016816..7018972)
Genome browser
AA seq
718 aa
AA seq
DB search
MTEVDKSISFDGRDIRLKVGLLAPQAGGSVLIQSGDTAVLVTATRSQAREGIDFLPLTVD
YEERLYAAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTLSMDE
QVPPDVLAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFVINPTYAEIEAGDLDLIVAGS
PDGVIMVEAGANQLPERDIIEAIDFGYEAVRDLIKAQQDLVAELGLEIVQATPPEVDQTL
DKFISDRASEEIKKILAQFELTKPERDAALDVVKESIANAIAELPEEDPVRVATAANSKA
LGNTFKEITKHFMRRQIIEDNVRVDGRKLDEVRPVSCLVDVLPKRVHGSGLFNRGLTQVL
SACTLGTPGDAQNLNDDLQTDQSKRYLHHYNFPPFSVGETKPMRAPGRREIGHGALAERA
LLPVLPPKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIK
EGDEVRVLTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKISGLSLDIIAQAVHQAKSAR
LHILDKMLQTIDTPRTETSPYAPRLLTIKIDPDMIGLVIGPGGKTIKGITEETGAKVDIE
DDGTVTISAVDESKAKKARNIIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVAVGDEVIVKVREIDNKGRINLTRLGIHPDQAAAAREAAAVNR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagttgataagtcaatatcctttgacggacgggatattcgactgaaggttggc
ctactagctccccaggctggtgggtcggttttgatacaatcaggggatacagctgttttg
gtgacggctacgcgatcgcaagccagagaaggcattgattttcttcccctcacagtagat
tacgaagaaagactatatgctgcgggtaggattcccggcgggatcatgcggcgtgaaggt
cgtcccccagaaaaaacaattcttactagccgtctgatagaccgtcccctgcgtccgctg
ttcccttcatggttgcgcgatgacttgcaaatagtcgctttgacattgtcaatggatgag
caagtaccgcccgatgtgttagctgttacaggtgcttctattgctaccctaattgctcaa
attccctttaatggcccaatggcagcagtgagggtaggcttagtaggtgatgattttgtc
attaacccaacctacgcagaaattgaagctggagacttggatctgatagtagcaggttca
ccagatggagtaatcatggtcgaggcgggagccaaccagttaccagagcgcgatattatt
gaggcgattgattttggctacgaagctgtgcgggatttaatcaaagcacaacaagattta
gttgcagaactaggtctagaaattgtgcaagcaactcccccagaagtagatcaaacttta
gacaagtttattagcgatcgcgccagtgaagagattaagaaaattctcgcgcaatttgaa
ctaactaagccagaacgcgatgccgctttggatgtagttaaggaaagtattgccaatgcg
atcgcagaactccctgaagaagacccagttcgcgttgctacagccgccaatagcaaagcc
ctaggtaacaccttcaaggaaattaccaagcacttcatgcgccgtcaaatcattgaagac
aacgtccgcgttgatggtcgcaaactcgatgaagtgcgtccggtttcttgtttagtcgat
gttttacctaagcgcgttcacggtagcggcttgtttaatcggggactcacccaggtatta
tctgcctgtacccttggtactcccggagatgcccaaaacctcaacgatgacttgcaaaca
gaccaatctaaacgctacttacaccattacaacttccctcccttctcagttggggaaacg
aagccgatgcgcgccccaggacggcgggaaatcggtcacggggcattagccgaaagagcg
ctgttaccagtgctaccacccaaagaacaattcccctacgtgattcgcgtggtatcggaa
gtgctatcttccaacggttccacctcaatgggttcagtctgtggttccactctagcctta
atggatgctggtgtaccaattctcaagcccgtcagtggtgcggcgatgggtttgattaaa
gaaggtgatgaagtccgcgttctcacggatatccagggcattgaagactttttaggcgac
atggactttaaagtcgctggtacggatacgggaattactgccttacaaatggacatgaaa
atttccggtctgtcattggacattattgcccaagcagtccatcaagctaagtcagcccgc
ttgcacattttagacaaaatgctgcaaaccatcgacacaccacgcacagaaacctcaccc
tatgcaccacgtttattgaccatcaagattgatcctgacatgattggtctggtgattggg
cctggaggtaagaccattaaaggcatcactgaagaaacaggtgcaaaagtggacatcgaa
gacgatggcaccgtcacgatttctgctgtggatgaaagtaaggcgaagaaagctagaaat
atcatccaaggcatgactcgtaaattgcacgaaggtgatgtctatgtgggacgagttacc
cgcattatacctattggtgcttttgtggaatttctgcctggaaaagaaggcatgattcac
atttcccaactagctgactaccgcgttggcaaagttgaagatgaagtagctgtaggcgat
gaagtgattgtcaaagtgcgcgaaattgacaacaaaggtcggatcaacctgacacgttta
ggtatccatcctgaccaagcagctgcagcgcgggaagcagcagcagtaaatcggtaa
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