Microchaete diplosiphon: NIES3275_64140
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Entry
NIES3275_64140 CDS
T09944
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mdp
Microchaete diplosiphon
Pathway
mdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES3275_64140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdp03019
]
NIES3275_64140
03016 Transfer RNA biogenesis [BR:
mdp03016
]
NIES3275_64140
Enzymes [BR:
mdp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NIES3275_64140
Messenger RNA biogenesis [BR:
mdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIES3275_64140
Transfer RNA biogenesis [BR:
mdp03016
]
Prokaryotic type
tRNA degradation factors
NIES3275_64140
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAY94366
LinkDB
All DBs
Position
complement(8143983..8146337)
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AA seq
784 aa
AA seq
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MEFSIATLLANFTDDKLVARKVLEKKLGCEDENSLQKLHIALDILEKIGILVKERGKYRR
VTEEGLIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNHTLLARIKQVESGFRAVPLDDRLLFELKLQTNGMKLEEALDHLAHVE
VLRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLARNFSETVAEAATKLPKRLLKA
DLKNRLDLRSLFTLTIAGANGDPKVVENAFSLEKTANGAWRLGVHISDVSHYVQPDEALD
REALRRGRSVYLGELVLPMFPDAVADRCSLVAGSDRLTLSFLINIDPKSGEVIDWEIQPS
VIQVDTALNKQQAEAVLNGDSHKQSEQVVQTLQDLEALRKAVKQVRLARGSLQLNLPPNQ
NPYYDEGILGAVVVNDLPVHSLLTELVLLVNQLTATHFSALGVPAIWRVQGTPDAEDVQE
MLKLAINLGVELALEPEVDIQPLDYQHLTRAFVESASEQVLTYLLQDTLKPSSYTTTKGP
HFGLALPQYLHFTAPLRRYPDLLLQRVYYSLLEHGRDRRNTRVKERINLRHSSSHIEINW
NVLPPELQQELQSDLTRVIIQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFQGVITGV
QSYGFFVEIEVPAAEVAASGHLGIPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASY
RLGDRVSVQVKSVDYYRQQIDLVTVGSDGVAKGLDVSVPNEDLSDIYLSNHLDPDDLDPY
GEDE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacactccttgccaatttcaccgatgataaattggtagctcgt
aaagttttggaaaagaaacttggctgcgaggatgaaaatagtttacaaaaacttcacatt
gctctagacatcttagaaaaaatcggaattttagtcaaagaacggggcaaatatcgccgg
gtgactgaagaagggttgattgaagccaaactccgctgttctagtaagggtttttgcttc
gcaattcaagatgtagaaggcgctgaggatatttacattcgtgaaagccatctcagtaat
gcgtggaatggcgatcgcgttttggtcagagtcctcaaagaaggtagccgtcgtcgctcc
ccagaaggcgaggtgaagctgattctcgaacgctcaaatcacactttactggcccggatt
aagcaagtagaaagcggctttcgcgcagttcctcttgatgatcgcttgctgtttgaattg
aaactgcaaacaaacggcatgaaattagaagaggccctcgatcacctagcccatgtagaa
gtactacgttaccccttagcacaatatccgccactgggtcgggtggtgcaaatcttggga
agtgatgcagaagcggcggctgatatcgatttggttacttgtaaacatgatttagcccgt
aatttctctgagacagtagccgaagctgctaccaagttaccaaaaagactattaaaagcc
gacttgaaaaatcggctagatttacgcagtttgtttaccctgacgatcgcaggcgctaat
ggagatcccaaagtcgtagaaaatgcctttagtttggaaaaaaccgctaatggtgcttgg
cgtttgggggtacatattagcgatgtatctcactatgttcagccagatgaagcactcgac
cgggaagccctgaggcgcgggcggtctgtgtatctgggagaattagtactaccgatgttc
ccagatgcggtggctgatcgctgttctttagtcgcgggaagcgatcgcttaaccctatca
tttttaattaatatcgaccccaaatccggcgaagtcatagactgggaaattcaacccagc
gtgattcaggtagataccgccctgaataaacaacaagccgaagccgttctcaatggtgat
tctcacaagcaatctgagcaggttgtccaaactctacaagacctagaagcgttacggaaa
gcggtgaaacaggtgcgtttggctcgcggtagcttacagttaaatttgccgcctaatcaa
aatccctactacgatgagggaattttgggtgctgtggtagtcaatgatttacctgtacat
tcgctgttaaccgagttggtactgttggtcaatcaactaacagctactcactttagcgcc
ctgggagtacccgcgatttggcgcgtccaaggtacaccggatgctgaagatgtccaagaa
atgctgaaattggcgattaatttgggtgtggaactggcgctagaaccagaagtagatatc
cagcccctagattatcaacatttaactagggcttttgtggaatctgcatcggagcaagtt
ttgacctacttgttgcaagataccctgaagccatcgagttacactactaccaaagggccc
cactttggcttggctttaccgcaatatctccactttacagcccccttgcgacgatacccc
gatttgctgttacagcgagtgtattattcgttgctggaacacgggcgcgatcgccgcaat
actcgggtgaaagaacgtatcaacctgcgtcactcttcttctcatatagaaattaattgg
aatgttttacccccagaattacaacaagaactgcaaagcgatttaacgcgggtcattatc
caaattaacgacagagaaaaagaagttcaagaagccgaagcagatttagctggactgcaa
aaagcccaactgatgaaacaacgcatcggtcaagtttttcagggcgtaattactggtgtg
cagtcttacggtttctttgtagaaatcgaagttcccgcagcggaagttgcagctagcggt
catttaggtataccactgcgcgttgagggattagtacatgttagttccctcaaagacgac
tggtacgaataccgcgccagacaacaagctttgtttggacgcaaaaatcgtgcttcttac
agattaggcgatcgcgtctctgtacaagtcaagagtgtcgattattaccgtcagcaaatt
gatttagtcacagttggtagtgatggtgtagccaaaggcttagatgtcagtgttccaaat
gaggatttatcagacatttatttatcaaaccatctcgatcccgatgacttagacccttac
ggagaggatgagtaa
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