Myotis daubentonii (Daubenton's bat): 132213061
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Entry
132213061 CDS
T10294
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
mdt Myotis daubentonii (Daubenton's bat)
Pathway
mdt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132213061 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdt03041
]
132213061 (SNRNP200)
Enzymes [BR:
mdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132213061 (SNRNP200)
Spliceosome [BR:
mdt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
132213061 (SNRNP200)
Complex C
U5 SnRNP specific factors
132213061 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
132213061
NCBI-ProteinID:
XP_059515078
LinkDB
All DBs
Position
12:20066054..20101506
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINPDGTINVDNFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEEVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILSTCAADIQRQRFLHCTEKDLIPYLEKLSNNTLRETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMSVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDGQMADVARFCNRYPNIELSYEVVDKDGIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgcagcctgcagtacgagtacaaagcgaactcaaatcttgtc
ctccaagctgaccgttctctcattgaccggacccgtcgggatgaacccaccggagaggtg
ctatccctggttgggaagctggagggcacccggatgggagataaggctcaacggaccaaa
ccacaaatgcaggaggaaagaagagccaagcgaagaaagcgtgacgaggaccggcacgac
atcaacaagatgaaggggtacactctgctctcggagggcatcgatgagatggtgggcatc
atctataagcccaaaaccaaagaaactcgggagacttacgaagtgctgctcagcttcatc
caggctgcccttggggaccagccacgtgatattctttgtggggcagctgatgaagttcta
gctgtcctaaaaaatgaaaagcttcgtgacaaggaaaggagaaaggagattgacctgttg
ctggggcagacagatgataccagataccatgtgctggtgaacttgggcaagaagatcaca
gactatggcggagacaaggaaatccagaatatggatgacaacattgatgagacctatggt
gtgaatgtacagtttgagtctgatgaggaggaaggcgatgaagatgtgtacggggaggtt
cgagaagaggcgtccgatgatgacatggaaggggatgaggctgtggtgcgctgcaccctc
tcagctaatcttgtagcctctggtgaactgatgagttctaagaagaaggatttgcaccct
cgggacattgatgcgttttggctgcagcggcagctcagtcgcttctatgatgatgccatt
gtatcgcagaagaaggcagacgaagtgttggaaatcttaaagacggccagtgatgaccgg
gagtgtgagaaccagctggtgctcctgctcggtttcaatactttcgattttattaaagtg
ctgcggcagcacaggatgatgattttatattgcaccttgctggccagtgcacagagtgaa
gctgaaaaggaaaggatcatgggaaagatggaagctgatccagagttatctaagttcctc
taccaacttcacgagaccgagaaggaggatctgatccgggaggagcggtcccggagggag
cgcgtgcggcagtcccgcatggacactgatctggaaaccatggatctggaccagggcggg
gaggcattggctccgaggcaggttctggacttggaggacctggtttttacccaagggagc
cacttcatggccaacaaacgctgtcagcttccggatgggtccttccggcgccagcgcaaa
ggctacgaagaggtgcacgtgcctgctctgaagcccaagcccttcggctccgaggaacaa
ctgcttccggtggagaagctgcccaagtacgcccaggctggattcgagggcttcaagacg
ctgaaccggatccagagtaagctctaccgggccgccctggagacagacgagaacctgcta
ctatgcgcccccactggcgccgggaagaccaacgtggccctgatgtgcatgctccgcgag
atcgggaagcacattaacccggacggcactatcaacgtggacaacttcaagatcatctac
atcgccccgatgcgctccctggtgcaggagatggtgggcagctttgggaagcgcctggcc
acatatggcattactgttgcagaactgactggcgaccaccagctgtgcaaggaggagatc
agtgccactcagatcattgtctgcacccctgagaagtgggacatcattacccgcaagggt
ggggagcgtacctacacccagcttgtgcggctcatcattctggatgagatccacctcctc
catgatgacagaggtcctgtcttggaagctttggtggccagggccatccgaaacattgag
atgacccaagaggaagtcagactcattgggctgagcgccaccctccccaactacgaagac
gtggccacatttctgcgtgttgatcctgccaagggcctcttctactttgacaatagcttc
cgcccggtgcctctggaacagacctacgtaggcatcacagagaaaaaggctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaagatcatggaacatgcggggaaaaatcag
gtgctggtgtttgtccactcccggaaggagactgggaagacggccagggccattcgggac
atgtgcctagagaaggacactctgggtctgtttctgagagagggctccgcctccacagaa
gttcttcggacggaggcagagcagtgcaagaacctggagctgaaggatctgctgccctat
ggctttgctattcatcatgcgggcatgaccagagtggacaggacactcgtagaggacctt
tttgctgataaacacattcaggttttagtttccacagcaactctggcttggggtgtgaat
ctccccgcacatacagtcatcatcaaaggtacccaggtgtatagtccagagaaggggcgc
tggacagagctgggagcactggacattctgcagatgctgggacgagccggaagaccccag
tatgacaccaagggcgaaggcatcctcatcacatcgcatggggagcttcagtactacctg
tccctcctcaaccagcagcttcctattgagagccagatggtgtcaaagctgcctgacatg
ctcaacgcggaaatcgtgctgggaaatgtccagaatgcaaaggatgcagtgaactggctg
ggctatgcctacctgtatatccgaatgctccggtccccaaccctctatggcatctctcat
gacgacctcaagggagaccccctgctggaccagcgccggctggacctggtgcatactgct
gccttgatgctggataagaacaacctggtcaagtatgataagaagacaggcaacttccag
gtgacagaactgggccgtatagccagccactactacatcaccaacgacacagtgcagacc
tacaaccagctgctgaagcccactctgagcgagattgagctcttccgagtcttctcgtta
tcctcagagttcaagaacatcactgtgagagaggaggagaagctggaactgcagaagctg
ctggagagggtgcccattcccgtaaaggagagcattgaggaacccagcgcaaagatcaac
gtgcttctccaagccttcatctcacagctgaaactggagggctttgcactgatggctgac
atggtgtatgtcacacagtcggcgggccggttgatgcgggccatctttgaaattgtcctg
aaccgcggttgggcacagcttacagacaagaccctgaatctctgcaagatgatcgataaa
cgcatgtggcagtccatgtgtccgctgcgtcagttccgcaaactccctgaggaagtagtg
aagaagattgagaagaaaaacttcccctttgagcgtctgtatgacctgaatcataatgag
ataggggagctcatccgcatgccgaagatgggcaagaccatccacaagtacgtccacctg
ttccccaagttggagctgtcggtgcacctgcagcccatcacgcgctccaccctgaaggtg
gagctgaccatcacgccggacttccagtgggatgaaaaggtccatggttcgtccgaggca
ttctggattctggtggaggatgtggacagtgaggtgatactgcaccatgagtattttcta
ctcaaggccaagtatgcccaggatgagcacctcattacgttctttgtgcctgtctttgaa
ccactgccccctcagtacttcatccgcgtggtgtctgaccgctggctctcttgtgagacc
cagcttccggtctccttccgacacctgatcctgccagagaaatacccacctcccactgaa
cttctggacctgcagcccttgcccgtgtctgccttgagaaatagcgccttcgagagcctt
taccaagataaatttcctttcttcaaccccatccagacccaagtgtttaacacagtgtac
aacagtgatgacaacgtgtttgtgggagcacccactggcagcgggaagaccatctgtgcg
gagttcgccatcctgcgcatgctgctgcagagctcggaggggcgctgtgtctacatcacc
cccatggaggcgctggcagagcaggtgtacatggactggtacgagaagttccaggaccgg
ctcagcaagaaggtggtgcttctgacgggcgagaccagcacagacctcaagcttctgggc
aaaggcaacatcatcatcagtacccctgagaagtgggacatcctctctcggcgctggaag
cagcgcaagaacgtccagaacatcaacctcttcgtggtggacgaggtccacctcatcggg
ggcgagaatgggcctgttttggaagtgatctgctcccggatgcgctatatctcctcccag
attgagcggcccattcgcattgtggcacttagctcctcgctctcaaatgctaaggatgtg
gcccactggctggggtgcagtgccacgtccactttcaacttccacccgaatgtgcgccct
gtgcccttggagctgcacatccagggctttaacatcagccacacacagactcgcctgctg
tccatggccaagcccgtgtaccatgcaatcaccaagcactcgcccaagaagcctgtcatc
gtttttgtgccgtcccgcaagcagacccgcctcactgcaatcgacatcctcagcacatgt
gcagcggacatccagcggcagaggttcttgcactgcacagagaaggacctgatcccgtac
ctggagaagctgagcaacaacacgctcagggagacgctgttgaacggtgtgggttaccta
cacgaggggctcagccccatggagcggcgcctggtggagcagctcttcagctcaggggcc
atccaggtggtggtcgcttctcggagtctctgctggggcatgagcgtggccgcccacctg
gtgatcatcatggacacccagtactacaatggcaagattcacgcgtacgtggactacccc
atctatgacgtgcttcagatggtggggcatgccaaccgacctctgcaggatgacgagggg
cgctgtgtcatcatgtgccagggctccaaaaaggatttcttcaagaagttcttatacgag
cccttgccagtggagtctcacctggaccactgcatgcatgaccacttcaacgctgagatt
gtcaccaagaccattgagaacaagcaggacgccgtggactacctcacctggacctttctg
taccgccgcatgacacagaaccccaactactacaacctgcagggcatctcccaccgccac
ctgtctgaccacttgtcagagctggtggagcagaccctgagtgacctggagcagtccaag
tgcatcagcatagaggacgagatggatgtggcacctttgaacctgggcatgatcgccgcc
tactattacatcaactacacaaccatagagctcttcagcatgtccctgaatgccaagacc
aaggtgcgggggctcatcgagatcatctccaatgcggctgagtacgagaacattcccatc
cggcaccatgaggacaacctcctgcggcagttggctcagaaggtcccgcacaagctgaac
aaccctaagtttaatgacccacatgtcaagaccaacctgctcctgcaggctcacctgtcc
cgcatgcagctgagtgctgagctgcagtcagataccgaggagatccttagcaaggcgatc
cggctcatccaggcctgtgtagatgtcctctccagcaatgggtggctcagtcctgctctg
gcagccatggaactggcccagatggtcacccaagccatgtggtccaaggactcatacctg
aagcagttgccacacttcacctcagagcacatcaaacgctgcacagacaagggagtggag
agtgttttcgacatcatggagatggaggatgaagagcgaaacgctctgcttcagctgtct
gacggccagatggcagacgtggcccgcttctgcaaccgctaccctaatattgagctctct
tacgaggtggtggataaggacggcatccgcagtggtgggccagttgtggtgctggtacag
ctggagcgagaggaggaagtcacaggtcccgtgattgcacctctcttcccacagaaacgt
gaagagggctggtgggtggtgatcggagatgccaagtccaatagcctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagcttgacttcgtggccccggccactggt
gcccacaactacactctgtacttcatgagtgatgcttacatgggatgtgaccaggaatac
aaattcagtgtggatgtgaaagaagctgagacagacagcgactcggattga
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integrated database retrieval system
