Myotis daubentonii (Daubenton's bat): 132234786
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Entry
132234786 CDS
T10294
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mdt Myotis daubentonii (Daubenton's bat)
Pathway
mdt03013
Nucleocytoplasmic transport
mdt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132234786 (UPF1)
03015 mRNA surveillance pathway
132234786 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdt03019
]
132234786 (UPF1)
Enzymes [BR:
mdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132234786 (UPF1)
5.6.2.5 RNA 5'-3' helicase
132234786 (UPF1)
Messenger RNA biogenesis [BR:
mdt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132234786 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
132234786 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
132234786
NCBI-ProteinID:
XP_059552117
LinkDB
All DBs
Position
5:complement(18947219..18990352)
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AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAAAGQLDVQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcactttcctggacaccgaggag
gctgagcttctcggcgccgacacacaaggctccgagttcgagttcacagacttcaccctc
cccagccagacgcagacgcctcccggaggccccggcggccccggaggtggcggcccggga
gtcccggtcggcgcgggtgctggcgctgcggccggacagcttgacgttcaggttggagga
cctgagggcatcctgcagaatggggctgtggatgacagtgtggccaagaccagccagttg
ctggcggagttgaacttcgaagaagatgaagaagatacctattacacaaaggacctacca
gtacacgcctgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggccccttggtgagaca
gtcctggagtgttacaactgtggctgccgcaacgtcttcctgcttggcttcatccctgcc
aaggctgactcagtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaagatcgctgcttcctc
tcctggctggtcaagatcccttcagagcaggagcagcttcgggcccggcagattacagcc
cagcaaatcaacaagttggaggagctttggaaggagaacccttctgccaccttggaggac
ctggagaagcccggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcc
taccagtaccagaacatatttgggcctctggtcaagctggaggctgactatgacaagaaa
ctgaaagagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggg
gacctggcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacacacaac
ttccaggtggatttcgtgtggaaatccacctcatttgacaggatgcagagtgcactgaaa
acttttgctgtcgatgaaacctctgtatcaggctatatctaccataaactgcttggccac
gaggtggaggacgtcatcatcaagtgccagctgcccaagcgcttcactgcacaggggctg
cccgacctcaaccactctcaggtttatgctgtgaagactgtgctgcaaagaccgctgagc
ctgatccagggaccaccaggaacagggaagacagtgacctccgccaccattgtctaccac
ctggcacggcagggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgactgagaagatccaccagactgggctgaaagttgtgcggctctgcgctaagagc
cgcgaggccattgactccccagtgtcattcctggccctgcacaaccagatcaggaacatg
gatagcatgccagagctgcagaagctgcagcagctaaaggacgagactggggagctgtca
tctgccgatgagaagcggtaccgagccctgaagcgcacagctgaaagggagctgctcatg
aacgcggacgtcatctgctgcacatgtgtgggtgcaggagaccccaggctggccaagatg
cagttccgctccattcttatcgacgagagcacccaggccacagagccggagtgcatggtc
cctgtggtccttggagccaagcagctgatccttgtgggtgaccactgccagctgggcccc
gtggtgatgtgcaagaaggcagccaaggccgggctgtctcagtcactgttcgagcgcctg
gtggtgctcggcattcgtccaatccgcctgcaagtccagtatcggatgcaccctgcactc
agtgccttcccatccaacatcttctatgagggctctctgcagaacggtgtcactgcagcg
gatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccgatgttcttc
tatgtgacccagggccaggaggagatcgccagctcgggtacctcctacctgaacaggacg
gaggctgcaaatgttgagaagatcaccacgaagctgctgaaggcaggtgccaagccggac
cagattggcatcatcacaccctatgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctgtaccaggaggtggagattgccagtgtggatgca
ttccaggggcgtgagaaggacttcatcatcctttcctgtgtgcgagccaacgaacaccaa
ggcatcgggtttttaaatgaccctaggcggcttaacgtggccctgacccgagcaagatat
ggagtcatcattgtgggcaaccctaaggccctgtccaagcagcccctgtggaaccacctg
ctgaattactacaaggagcagaaggtgctggtggaggggcctctgaataacctgcgggag
agcctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggagcccgc
ttcatgaccacagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgat
cggagcagccagggccggccctcgaacatgtacttccagacccacgaccagctcggtatg
atcagtgctggccccagccacgtggccgccatgaacattcccatccccttcaacctggtc
atgccacccatgccaccaccagggtattttggacaggctaacgggccagctgcaggccga
ggcaccccgaaaggcaagacgggccgtggtggacgccagaagaaccgctttggccttcct
gggcccagccagacgaacctgcccagcagccaggccagccaggatgtggcatcacagccc
ttctcccagggggccctgacacagggctacatctccatgagccaaccctcccagatgagc
cagcctggtctctcccagcctgagttgtcccaggacagttaccttggtgatgaatttaag
tcccagattgatgtggcactatcgcaagattctacgtaccagggggagcgggcgtaccag
catggtggagtgacgggactgtctcagtactag
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