Myotis daubentonii (Daubenton's bat): 132236719
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Entry
132236719 CDS
T10294
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
mdt Myotis daubentonii (Daubenton's bat)
Pathway
mdt04120
Ubiquitin mediated proteolysis
mdt04137
Mitophagy - animal
mdt04141
Protein processing in endoplasmic reticulum
mdt05012
Parkinson disease
mdt05014
Amyotrophic lateral sclerosis
mdt05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132236719 (PRKN)
04120 Ubiquitin mediated proteolysis
132236719 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
132236719 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
132236719 (PRKN)
05014 Amyotrophic lateral sclerosis
132236719 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
132236719 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mdt04131
]
132236719 (PRKN)
04121 Ubiquitin system [BR:
mdt04121
]
132236719 (PRKN)
03029 Mitochondrial biogenesis [BR:
mdt03029
]
132236719 (PRKN)
Enzymes [BR:
mdt01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
132236719 (PRKN)
Membrane trafficking [BR:
mdt04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
132236719 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
132236719 (PRKN)
Xenophagy
Other xenophagy associated proteins
132236719 (PRKN)
Ubiquitin system [BR:
mdt04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
132236719 (PRKN)
Mitochondrial biogenesis [BR:
mdt03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
132236719 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
132236719
NCBI-ProteinID:
XP_059555878
LinkDB
All DBs
Position
6:2886736..3419858
Genome browser
AA seq
469 aa
AA seq
DB search
MIGTWCLSVFVRFNSSHGFPVEVDSATSIFQLKEEVAKRQGVPADQLRVIFAGKELRNDL
VVQSCDLGQQSIVHVVLRPGREGPAVAAGGDRPPGTAGAFAREPESLTRVDFSSSVLPTD
SAGLAVILHDDREGAARTAGRPAGRPAYNSFYVYCKGPCQRVQPGKLRVRCGTCQQATLT
LAQGPSCWDDVLIPKRMRGECQSPGCPGTSAEFFFKCSAHPTSDKETSVALNLITTNSRG
ITCITCTDIRSPVLVFQCNHRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPD
SLIKELHHFRVLGEEQYGRYQHYGAEECVLRMGGVLCPRPGCGAGLLPEPGQRRVTCEAG
GLGCGLIFCRDCKDAYHEGECSALAAASGTAAQAYRVDARAAEQARWEESSRETIKKTTK
PCPRCHVPVEKNGGCMHMKCPQPQCQLEWCWNCSCEWSRACMGAHWFDV
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgatcggtacgtggtgcctgtcagtgttcgtgaggttcaactccagccacggtttccca
gtggaggtggattctgccaccagcatcttccagctcaaggaggaggttgctaagcgacag
ggggttccagccgaccagctgcgcgtgattttcgcggggaaggagctcaggaatgacctg
gtggtgcagagctgcgacctgggccagcagagcatcgtccacgtggtgctgagacccggg
agagaaggccccgcggtggccgctggcggggaccgtcccccaggcactgcgggggccttc
gcgagggagcccgagagcctgacccgcgtggacttcagcagctccgtgctccccaccgac
tccgcgggcctggccgtcattctgcacgacgacagagagggcgctgcgcggacagcgggc
agaccagcaggtcgaccggcctacaacagcttctacgtctactgcaagggcccctgccag
cgggtgcagcccgggaagctccgggtgcggtgcggcacctgccagcaagccacgctcacc
ttggcccagggcccgtcctgctgggacgacgtcctgatcccgaagcggatgaggggtgag
tgccagtcgccaggctgccccgggacaagcgcggaatttttctttaaatgttcagcgcac
ccgacctctgacaaagaaacatcagtagctttgaacctgatcacaaccaacagccggggc
atcacctgcatcacgtgcaccgacatcaggagcccggtcctggttttccagtgcaaccac
cgccacgtgatctgcttggactgcttccacctgtactgcgtgaccaggctcaacgaccgg
cagtttgtccatgacccgcagctgggctactcgctgccgtgtgtggccggctgccccgac
tccttgatcaaagagctccatcacttcagggtcctcggggaagagcagtatggccgctac
cagcactacggcgccgaggagtgcgtgctgcgcatgggcggcgtgctgtgcccgcgcccc
ggctgtggcgctgggctgctccccgagcccgggcagcggagggtcacctgcgaggccggc
ggccttggctgcgggctcatcttctgccgcgactgtaaggacgcctaccacgagggagag
tgcagcgccctggccgccgcctcagggacagccgctcaggcctaccgggtggacgcccgg
gcggcggagcaggctcgctgggaggagtcctcccgggagaccatcaagaagaccaccaag
ccctgcccgcgctgccacgtgcccgtggagaagaacggcggatgcatgcacatgaagtgc
ccgcagccccagtgccagctggagtggtgctggaactgcagctgcgagtggagccgcgcc
tgcatgggtgcccactggttcgacgtgtag
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