Entry |
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Symbol |
SPG11
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Name |
(RefSeq) spatacsin isoform X1
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KO |
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Organism |
mdt Myotis daubentonii (Daubenton's bat)
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Pathway |
mdt05022 | Pathways of neurodegeneration - multiple diseases |
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Brite |
KEGG Orthology (KO) [BR:mdt00001]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
132238115 (SPG11)
05022 Pathways of neurodegeneration - multiple diseases
132238115 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:mdt03400]
132238115 (SPG11)
DNA repair and recombination proteins [BR:mdt03400]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
132238115 (SPG11)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
1:63331436..63438409
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AA seq |
2429 aa
MERVVPMLLVPVPAEATARLGSRAQLHREQEVLGSLTAAGSLQVLSLAAGGRGGGGCSLD
GPFRHFVWEDSHNSSTPTDKPRLLALSENNELLIYEFNLKDGRCDGTILYNCSEEALQKL
IEDQNVSISLLTLRILSFHNNTSLLLINKCIILHIMFPGRDAEIRVLNYFTLCLPAQAVD
SIIDMQLCRGILFVLSSLGWIYIFDIVGGTHVAHVDLALHQEDMCDEQQQEPAKISSFTS
LKVSQDLDIVVIVSSSNSAIALNLNLYFRQHPGHLFCEKTLEDIPIEGAKGIDEDDLVNS
DYNMKLTKFSFQVDRSWKAQLLSLNETIKSSTMEVSHCAPWFQDILHLEYPDSNNHCTNV
PGWAFIPQDIMHSQYSFPQKSHAKTSDPGRAWKIMHISEQEEPIELRCVSVTGFTALFAW
TVGKMGCTIVLWDLEIEGIQCFSLGKRCIPIDNSGDQQLCLVLTENGLSLILFGLTQEEF
LNRLMIHGSASTVDTLCHLNDWGRCSIPIHALEAGIENRQLDTVDFFLKSKENLLNPSPK
SSVPDQFDHFPSQLYLRNVEELTPALDLLCSAIRESNSETQSKNFSEQLLNLTLSFLNKQ
IKELFIHSEELDEHLQKGVNILTSYINELRTFMIKFPWKLTDAVDEYDVNENVPKVKEST
IWEKLSIEEVIANAILNNKIPEAQTFFRINSHSAQRLEELIKIGLDLVFDNLKKSNVKEA
SELLKNMGFDVKDQLHKICFYTTDKNIRDFLVEILKEKNSFSEKEKRTIDFVHQVEKFYS
EHLQENMQIQSFPRYWVMEQDFFKHKSVLDSFLKYDHKDKLNKQNHRIALNWAQWWNQLT
QESILLPRINPEEYKSYSPEALWRYLTARHDWLSITSWIGEFQTQNSYSSLQQNKWPPLT
IDIIDQSTCCNNNMRNKILDELARNGIFLISELEDFELFLLRLNRIGGVMQDTLPVQNYR
SKEGWDFHSHFILYCLEHSLQYLLYVYLDCYKLSPPNCSFLGKKELHETHPWFEFLVQCR
EVSSNLTDPKLIFQASLANAQILIPSNQASVSSMLLEGHTLLALATTMYAPGGVSQVVQN
EENENCLKKVDPQLLKMALTPYPKLKTALFPQYTAPSVLPPDITLYHLIQSLLPFDPSRL
FGWQSANTLAIGDVSSHLPHFSSPDLVNKYAIVERLNFAYYLYHGRPSFAFGTFLVQELT
KSKTPKQLIQQVGNEAYVLGLSSFHIPSIGAACVCFLELLGLDSLRLRVDMKVANIILSY
RCANEDAQYSFIRESLAEKLSKLAGGEKATTEELLVFLEEAIWNSIQQQEIKRLYSESSI
QWALVVQFCRLHNIKLSTSYLRECAKANDWLQFIIHSQLHNYHPDEVKSLLQYFSPVLQD
HLRLAFENLPSVSNSRMDSDQVCNKSPQELQKSKEERTDFFEILLQCSEEPNSWCWLLAE
AVKQQSPILSVLASCLQDASAISCLCVWIIASVEDSIAAEAMGHIQDSLEGHTWDLEDFS
VIWRTLLTRQKSKTLIRGFQLFFKDSPLLLMLEMYELCMFFKNYKEAKAKLLEFQKSLET
LETAAIKVHAAIPVPWLKEQVSFLLKLMLQQCRTQYELGKLLQLFVGIEHLFSEGPDVKK
LCILSHILKDTSIAINNVIIANYSLQNFQQECKSILEKLETNGQFALAKRVAELAELPVD
NLVIEEVTQEIQTLKHIDQWSLKQTRIDFWKKCHENFKKNSISSKAASSFFSAQALVARE
YPTEEGQSSTEECHLLLTLAGHWLAQEDLVPVEELEELEKQIWLCRVTQHTLRGNQEERE
PTFSQQISASGELSFDSLASEFSFSKLAALNTSKYLELNGLPSKETCENRLDWKEQESLN
FLIGRLLDDGCVHEASRVCRYFHFYNQDVALVLHCRALASGEASVDDLQPEIHALLQSAE
LLEEEKEPRIPLRKVSSTSSLDSQSFVVLPPSDEMVTNLETLTHKCLHGKNYCRRVLCLY
ELSKELGCSYTDVAAQDGEAILRAILASPQSDRCKRAQAFISTQGLEPERVADLVAEEVT
RELLSPSEGAGQKQMVTPAEESQAFLQLTTLCPDRTLVGMKLLEKISSVPHGELSCTTEL
LILAHHCFTLTCHMEGIIRVLQAARLLTDNHLAPNEEYGLVVRLLTGIGRYNEMTYIFEL
LHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAA
ACIQLKLIESQPWEDSIKNGHQLKQLLLKALTLMLDAAESYAKDSCVRQALHCHRLTKLL
TLQIHFLNTGQNTMLINLGRHRLMDCIMSLPRFYQASIVAEAYDFVPDWAEILYQHVILK
GNFHYLEEFKQQRLLRTSIFEEISKKYKQHQPTDTAVKNLKKLLTYCEDIYLYYKLAYEH
KLYDVVNMLLKDPQTGCCLKDMLAENTFK |
NT seq |
7290 nt +upstreamnt +downstreamnt
atggagcgggttgtgccgatgttgttggtgccggtccccgctgaggccacggcgcgtctg
ggaagccgggcgcagctgcaccgagagcaggaggttctggggagcctgaccgccgcaggc
agccttcaagtgctttccttggccgcgggcggccggggcgggggtggctgctccctggac
ggccccttccggcactttgtgtgggaggattctcataacagcagcacaccaacagacaag
cccagactgctcgctcttagtgaaaataatgaattgctcatctatgaatttaatttgaaa
gatggaagatgtgatggaaccattttgtataactgtagtgaggaggctttgcaaaagctc
attgaagatcaaaatgtcagtatttccttattaactttgagaattctgtcatttcacaat
aacacatcattattgctcatcaacaaatgtatcatcctgcacatcatgtttcctggaaga
gatgctgagattagagtactcaactatttcacattatgcttgcctgcacaggctgtggac
agtattattgacatgcagctctgcagaggaattcttttcgttttgagtagtttaggctgg
atctacattttcgacattgtgggtggtacacatgtagctcatgtggatttagcacttcac
caagaagatatgtgtgatgagcagcaacaggagccagccaagatttcttcctttacttca
ctgaaagtgtctcaagacctagatattgttgtgattgtcagctcctccaactctgcaatt
gctcttaacttaaacttgtatttcaggcaacacccaggacacctattttgtgaaaaaact
ctagaagatattcctattgaaggtgctaaggggatagacgaagacgatcttgtgaattct
gactacaacatgaaactgaccaagttttccttccaagttgataggtcttggaaagcccag
ctattatcattgaatgaaacaataaagagctccacaatggaggtttcccactgtgctcca
tggttccaggatattttgcatttggagtaccctgactctaataaccattgtaccaatgtg
ccaggttgggccttcattccacaggacataatgcacagtcagtatagttttccacagaaa
agtcatgccaagaccagtgatccaggaagagcatggaaaataatgcacatcagtgaacaa
gaggaacccatcgagcttagatgtgtgtctgtgacaggattcactgccctgtttgcttgg
acagtaggaaagatgggctgtaccattgtcctttgggatttggagatcgagggcatacag
tgcttttcccttggcaaaaggtgtattcctatagataatagtggagaccagcaactgtgc
cttgttttgacagaaaatggactctctctgattttgtttggtttgacccaagaggagttt
ttaaatagactaatgatccatggaagtgccagcactgtggacactctctgccatctcaat
gattggggcaggtgctcaatccccatacatgcactagaggcaggaatagaaaatcgtcag
ctggacacagtagatttctttttgaagagcaaggaaaatcttttgaatccatccccaaaa
tcttctgtacctgatcagtttgatcactttccatcacaattatatttaagaaatgtggaa
gagctgacaccagcattggatttactttgctcagcaattagagaaagtaattctgaaacc
caaagcaaaaacttttcagaacaattacttaatcttacactgtccttccttaacaagcaa
ataaaggagctttttattcacagtgaagagttagatgaacatctacagaaaggcgtgaac
attttgaccagctacattaatgaacttagaaccttcatgataaagtttccttggaagcta
acagatgctgtagatgaatatgatgtaaatgaaaatgtccccaaagtaaaggagagcact
atatgggagaaactcagcattgaggaagttattgccaatgccattttaaacaacaaaata
ccagaggcacaaactttcttcaggattaacagtcactctgctcaaagactcgaagagctg
attaaaataggcctcgatttggtctttgacaatttgaaaaagagcaatgtaaaggaagcc
tctgaacttttaaagaatatgggttttgatgtaaaagaccagttgcataagatatgcttc
tatacaactgataaaaatatacgggactttttggttgaaattttaaaagaaaaaaattct
ttttctgaaaaagagaaaagaactatagactttgtgcatcaagttgagaagttttattca
gaacatttgcaagaaaatatgcagatccagtcctttcccaggtattgggtaatggagcaa
gactttttcaagcacaagtctgttttggactcattcctgaaatacgatcataaagataaa
cttaataaacagaaccacagaattgcattaaattgggctcagtggtggaaccaactaaca
caagaatctatcctccttcccaggataaatccagaagaatataaatcatattcccctgaa
gccctctggagatacctcacagctcgccatgattggctaagcattacctcgtggattgga
gaatttcaaacccagaatagttattcttcacttcagcagaacaaatggcctcctctgact
attgatattattgatcagagtacttgctgcaacaacaacatgaggaataaaattttagat
gagctggccaggaatgggatttttcttatatctgaactagaagactttgaactcttcctc
ctaagactgaaccgcattgggggtgtgatgcaagataccctccctgttcaaaactacagg
tccaaagaaggttgggatttccattctcacttcattctttattgtttggaacacagcctg
cagtatcttctttatgtctatctcgactgttacaagcttagtcctccaaattgttccttt
ttggggaaaaaagaattacatgaaactcacccctggtttgaatttttagttcagtgtcga
gaagtttctagtaacttaacagatcctaaactgatcttccaggctagccttgcgaatgct
caaatactgattcccagcaaccaggccagtgtaagcagtatgctgttggaaggacatacc
ctcctggcccttgctaccacaatgtatgctcctggtggtgtcagccaggttgttcagaat
gaagaaaatgagaactgtttgaaaaaagtagatccccagctactgaagatggcattaact
ccttatcccaagctaaaaactgctctcttcccacagtacactgcccctagtgtcctacca
ccggatattacactctaccaccttattcagtcattattgccctttgatcctagcagattg
tttggctggcagtctgccaacacactggctataggagatgtatcaagtcatctcccacat
ttctctagccctgatctggttaataaatatgctatagtggaacgtctgaattttgcttat
tatttatatcatggacggccatcatttgcatttggtacttttctggtccaggaattaact
aagagcaagacccccaagcagctgatccagcaagtaggcaatgaagcctatgttttaggc
ctctcttccttccacataccttcaataggagctgcctgtgtttgtttcttagaattgctt
gggctcgacagcctcaggctcagagttgatatgaaagtggccaatataattctgagctac
aggtgtgcaaatgaagacgctcagtacagctttatcagagagtctctagctgaaaagctg
tctaaactggctgggggtgaaaaagcaaccacagaagaattgcttgttttcttagaggaa
gccatatggaacagtattcaacaacaggaaataaagaggttatacagcgaatctagcatc
cagtgggcattggtggtacagttctgcaggctccataatataaaactgagcacgtcttac
cttagagaatgtgccaaagcaaatgattggttacagttcattattcacagccagctccat
aattaccacccagatgaggtgaaatctcttctccagtatttcagccctgtccttcaagac
cacttaaggctagcttttgagaacttgccctcagtgtccaactccagaatggatagtgat
caagtctgcaacaagtccccccaggaactccagaaaagcaaagaagagagaactgatttc
ttcgaaattctgctccagtgctcagaggagccaaactcctggtgctggctcctggctgaa
gcagtgaaacaacagtcccctattcttagtgtcctagcctcatgtctgcaggatgccagt
gctatttcttgtctctgtgtttggatcatcgcttctgtggaggacagtattgcagctgaa
gcaatgggacacatccaggactcattggagggccatacatgggaccttgaggacttctca
gtcatctggagaacattattaacaaggcagaagagcaaaactctcatcagaggtttccag
cttttctttaaggattccccattactactgatgttggagatgtatgaactctgtatgttc
ttcaagaattataaggaagccaaagctaaactactggagttccagaagagccttgaaact
cttgaaacagcagccataaaggtccacgctgccatccctgtcccatggctgaaggagcag
gtgtcttttcttttgaagcttatgctgcagcagtgcaggacccagtacgagctgggaaag
cttttacagctgtttgttgggatagagcatctcttctctgagggtccagatgtaaagaag
ctgtgtatccttagccacattttgaaggatacatccatagccattaataatgtaattatt
gccaactatagccttcagaattttcagcaggaatgtaaatctattttggaaaaactggaa
acgaatggacagtttgctttggctaagagggtagcagaattagctgagttacctgtggac
aacttggttattgaagaggtaacacaggaaatacagaccttaaaacacattgaccagtgg
tccctgaaacaaacaagaattgacttctggaaaaaatgccatgagaattttaagaaaaat
tccatttcaagcaaagcagcttcttcctttttctcagcccaggcccttgtggcgcgtgag
taccctactgaggagggacagagcagcactgaggagtgccatctgctgctcaccctggca
gggcattggcttgctcaggaggacctggtccctgtggaggagctggaggagctggagaag
cagatctggctctgccgtgtcacccagcacaccctcagaggaaaccaggaggaaagagag
cccacattttctcaacagatctcagctagtggtgaactttcctttgacagcttagccagt
gagttttcattctccaagttggctgccctgaacacatcaaaatatctagaacttaatggc
cttccatccaaagagacttgtgagaacagactagattggaaggagcaggagtcactaaac
tttttgattgggcgcctattggatgatggctgtgtgcatgaagccagtagagtatgccgg
tactttcacttctataaccaagatgttgccttggtactgcactgcagagcactggcttca
ggggaagctagtgtggatgacctacagccagagatccatgctctcctacaaagtgctgag
ctgctggaggaagaaaaagaacctcgcattcctctaaggaaagtctcaagcacttcaagt
ttggacagtcagtcatttgtggtgctgccccccagtgatgaaatggtgactaatctggaa
actctgacacacaaatgcctccatgggaagaactactgccgacgggtcctctgtctgtat
gaactttccaaggagttgggctgttcctacacagatgttgctgctcaggatggtgaggcc
atactccgagcaatcttggcctctccgcagtctgaccgatgcaagcgagcccaagccttc
atcagcactcagggcctggagccagaaagggtggctgaccttgtggccgaagaggtgacc
cgggagctactgtccccatcagagggagcaggacagaagcagatggtcaccccagcagaa
gaaagccaggcatttcttcagctaaccactttgtgtccagaccgcaccttggtaggaatg
aagttgttggaaaagatttcctccgttccccatggggaattgtcctgcaccacagagctg
ctgattctggcccatcactgcttcacgctgacatgccacatggagggcatcatccgagtt
ctgcaggctgctcggctgctcacagacaaccacttggcccccaacgaggagtatgggctg
gtggtgcgtctcctcactggcattggaaggtacaatgagatgacatacatttttgaattg
ctgcataaaaagcactacttcgaagtgctgatgaggaagaagttggatccgagtggtacc
ctgaagacagccctacttgactacatcaaacgctgccgccctggggacagtgagaagcac
aacatgatcgccctgtgcttcagcatgtgcagggaaatcggggagaaccatgaggcagct
gcctgcatccagctgaaactgattgagtctcagccctgggaggatagtatcaagaatggg
caccaactgaagcagctgctactgaaggccctgactctcatgctggatgccgccgagagt
tatgcgaaggattcctgtgtacgacaggccctgcactgtcacaggctcaccaagttgctg
acactgcagattcactttctgaacactggccaaaacacaatgcttatcaacctaggccgc
cacaggctgatggactgcatcatgtccctacctcggttctaccaggcttctattgtggct
gaggcctatgactttgttcctgattgggctgaaattctataccaacatgtgattcttaaa
ggaaactttcattacttggaagaatttaagcagcaaaggttattaagaaccagtatattt
gaagagatttcaaaaaaatataaacaacaccagcctactgatacagctgtgaaaaacctg
aagaagttactcacatattgtgaagatatctacttgtattacaagctggcatacgaacac
aaactttatgatgttgtgaatatgcttctgaaggaccctcagacaggctgctgtctaaag
gacatgctagcagaaaacacatttaaatga |