Mycolicibacterium duvalii: MDUV_06440
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Entry
MDUV_06440 CDS
T06492
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mdu
Mycolicibacterium duvalii
Pathway
mdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MDUV_06440 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdu03019
]
MDUV_06440 (rne)
03009 Ribosome biogenesis [BR:
mdu03009
]
MDUV_06440 (rne)
Enzymes [BR:
mdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MDUV_06440 (rne)
Messenger RNA biogenesis [BR:
mdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MDUV_06440 (rne)
Ribosome biogenesis [BR:
mdu03009
]
Prokaryotic type
rRNA processing factors
MDUV_06440 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BBX15784
UniProt:
A0A7I7JWV8
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All DBs
Position
696989..699865
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AA seq
958 aa
AA seq
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MADNENFPAPTHDLPEEAQQPADSAGEVQEAPPERLRVHSLARVLGTTSRRIIDALVELD
GRARSAHSTVGREEADRVREVLAQPEAAAEAESQPAAETPAEPEPAASDAGSSPAEVTAE
EEPESRLILEAPTPPAAEPADYLPLFVAPQPVRFDEVRSGDDSDDADDDAADSDADSDDD
TDADDDQNGRPAAKRRRRGRRGRGRGRGEQNGDDASSDGDGDNQTDSDGGGADSDADSDD
DNGDEDQNGGDGTSRRRRRRRRRKSGSGDDSDSNGSSDDPPNTVVHEREPRKNEKSTADP
DAIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVERVMVVRDKVRTEPP
HEGARYTQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGV
LYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYV
PGASSTGISRKLPDTERQRLKEILKEVVPSDAGVIIRTASEGVKEDDIRADVERLQKRWS
EIEAKAAEITAKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDDAWKTINDYVEAV
APELMPRLTKYEPAGSGDGSGPDVFAVHRIDEQLTKALDRKVWLPSGGTLVIDRTEAMTV
VDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVL
RRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCTHCGGRGIMLHGDPVD
STSSGGGKKSESGGGGGRRGKRGKRGNREQDVQVAKLPSHSPGDHPMFKAMAAANGKHED
DDDDTGDAEESAQDVAELEPDTIRQAVGDTDDGDEDDTEDDDTDDDENDENDEDEDDEDE
IDLDDDEEEIEDDIDVVNSDDSENDDNDSEDEVPVAVSRPGRHRRRAAARPAGPPSQD
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacaatgagaactttccagcaccgacccacgatctcccggaagaggcccagcaa
cctgctgactctgccggtgaagtgcaggaagcgccgcccgaacggctgagggtgcactcg
ctggcgcgggtgctcggcaccaccagccggcggatcatcgatgcgctggtcgagctcgat
ggccgggcgcgcagcgcccactccaccgtcggccgcgaagaagccgaccgtgtgcgcgag
gtgctcgctcagccggaggccgcggccgaggccgagtcgcagcccgcggccgagaccccg
gctgagccggaaccggccgcgtccgacgccgggagcagccccgccgaggtgacggcggaa
gaagagcccgaatcgcgcctgatcctggaggcaccgaccccgccggccgccgagcccgcc
gactatctgccgttgttcgtcgccccgcagccggtgcggttcgacgaggtgcgcagcggc
gacgattccgacgatgccgacgacgacgccgccgactctgatgccgactcggacgacgac
accgacgccgacgacgaccagaacgggcggccggccgccaagcggcgccggcgcggtcgc
cggggccgcggccggggccggggcgaacagaacggcgacgacgcgtcgtccgacggtgac
ggagacaaccagaccgattccgacggaggcggtgccgactccgacgcggattctgacgac
gacaacggcgatgaggaccagaacggcggcgacggcaccagccggcgccggcgccgcagg
cgtcgtcgcaagtccggctcgggcgacgacagcgacagcaacggctcctccgacgacccg
cccaacaccgtcgtccacgagcgcgaaccccgcaagaacgagaaatccaccgcggatccc
gacgcgatccagggcatcagcggttccacccgcctcgaggccaaacggcagcgccgccgc
gacggccgcgacgcgggccgacgtcggccgccgatcctgtccgaagccgaattcctggcg
cgccgggaggccgtcgagcgggtgatggtggtgcgcgacaaggtccgtaccgagccgccg
cacgagggcgcccgctacacccagatcgcggtgctcgaagacggggtggtcgtcgagcac
ttcgtgacctccgcggcgtcggcctcgctggtcggcaacatctacctgggcatcgtgcag
aacgtgctgccgtcgatggaagcggcgttcgtcgacatcggccggggccgcaacggtgtg
ctctacgccggcgaggtgaactgggaggccgccggcctgggcgggcagaaccgcaagatc
gaacaggccctcaaacccggcgactacgtcgtcgtccaagtcagcaaggaccccgtcggg
cacaagggtgcccgcctgaccacccaggtcagtctcgccggccggtatctggtgtacgtg
ccgggcgcctcgtcgaccggcatcagccgcaagctgcccgacaccgagcgacagcggctc
aaggagatcctgaaagaggtcgtgccgtccgatgccggcgtgatcatccggaccgcctct
gaaggcgtcaaggaagacgacatccgcgccgacgtcgagcggctgcagaagcgctggagc
gagatcgaggccaaggctgccgagatcaccgcgaagaaggccggtgccgcggtcgcgctc
tacgaagagcctgacgtgctggtcaaggtcattcgcgacctgttcaacgaagacttctcc
ggactgatcgtctccggcgacgacgcctggaagacgatcaacgactacgtcgaagccgtg
gcgcccgaactgatgccgcgcctgaccaaatacgaacccgcaggatcgggcgacgggtcg
ggacccgacgtgttcgccgtgcaccgtatcgacgaacagctgaccaaggcgctggaccgc
aaggtgtggctgccgtcgggtggaaccctggtcatcgaccgcaccgaggcgatgaccgtc
gtcgacgtcaacaccggcaagttcaccgggtccggcggcaacctcgagcagaccgtgacg
cgcaacaacctcgaagccgccgaggagatcgtgcgtcagctgcgactgcgagacatcggc
ggcatcgtggtcatcgacttcatcgacatggtcctggagtccaaccgcgacctggtcctg
cgccggctgaccgaggcgctggcccgcgaccggacccgccatcaggtttcggaggtgacg
tcgctgggtctggtgcagctgacccgcaagcggctcggcaccggactcgtcgaggccttc
tccacgtcatgcacccactgcggtgggcgcggaatcatgttgcacggcgaccccgtggac
tccacctcgtccggcggcggcaagaagtccgagtccggtggcgggggcggccgccgcggc
aagcggggcaagcgcggcaatcgtgagcaggacgtgcaggtcgcgaagctgccctcgcac
agccccggcgaccacccgatgttcaaggcgatggccgccgccaacggcaagcacgaggac
gatgacgatgacaccggcgacgccgaggaatcggcgcaagacgtcgccgagctcgaaccg
gacacgatccgccaggccgtcggcgacaccgacgacggcgacgaggacgacaccgaggat
gacgacaccgacgacgacgagaacgacgagaacgacgaggacgaggacgacgaggacgag
atcgacctcgacgacgacgaggaggagatcgaggacgacatcgacgtcgtgaactcggac
gactccgagaacgacgacaacgactccgaggatgaggtgcctgtcgccgtctcgcgtccg
ggccggcaccggcgccgcgcagccgcccgcccggccggcccacccagccaggactga
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