Mycolicibacterium duvalii: MDUV_34480
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Entry
MDUV_34480 CDS
T06492
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mdu
Mycolicibacterium duvalii
Pathway
mdu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mdu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MDUV_34480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdu03021
]
MDUV_34480 (rpoC)
03400 DNA repair and recombination proteins [BR:
mdu03400
]
MDUV_34480 (rpoC)
Enzymes [BR:
mdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MDUV_34480 (rpoC)
Transcription machinery [BR:
mdu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MDUV_34480 (rpoC)
DNA repair and recombination proteins [BR:
mdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MDUV_34480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBX18588
UniProt:
A0A7I7K4V1
LinkDB
All DBs
Position
complement(3581680..3585633)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVERKALEDQRDADLEARAQKLEAD
LKELEEEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDELL
YRELQDRYGEYFEGAMGAESIKKLIETFDIEAEADNLRDVIRNGKGQKKLRALKRLKVVA
AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTMVEGDKGEYA
PAGKDQPETGVYSSPAEAIMAMDRGALSVRAKIRVRLTHQRPPTELEAELFPEGWEFGRP
WTAETTLGRVMFNELLPPTYAFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPQKQEILERYESEADGIEKKYQRGALNRDERNEALVKIWQDA
TEEVGKALEEFYPEDNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVTL
AEQAEDGTLVRDQHIETSAYARTLATDAVDTDGNVVVERGHDLGDPAIDALLAAGITEVK
VRSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARVPRNRAPIADVSGRIQLEESDKFYKITIVPDDGGEEVVYDK
LSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIP
AGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgcaactggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggtaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgtgagcggatgggccatatcgaactggccgcgccg
gtcacccacatctggtacttcaagggtgtcccgtcgcggctcgggtatctgctcgacctc
gcgcccaaggatctcgagaagatcatctacttcgcggcgtacgtgatcaccagcgtcgac
gacgagatgcggcacaacgagctgtccaccctcgaagcggagatggccgtcgaacgcaag
gcgctcgaggatcagcgcgacgccgacctcgaggcgcgggcgcagaagctcgaggccgac
ctcaaggagctcgaggaggagggcgccaagtctgatgtgcgccgcaaggtgcgcgacggc
ggcgagcgcgagatgcgtcagctgcgtgaccgggcccagcgcgagctcgaccggctcgag
gagatctggacgacgttcaccaagctggctcccaagcagctgatcgtcgacgagctgctc
taccgcgagctgcaggatcgctacggcgagtacttcgaaggcgccatgggcgcggagtcg
atcaagaagctgatcgagaccttcgacatcgaggccgaggccgacaacctgcgcgacgtc
atccgcaacggcaagggccagaagaagctgcgtgcgctgaagcgtctgaaggtcgttgcg
gcgttccagaccaatcggaactcgccgatgggcatggtgctcgacgcggttccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgtttcgccacctcggacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcgcatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgccgtggccgcccggtcaccgggcccggcaaccgtccgctgaag
tcgctgtcggatctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccatgcgcagaacatcaagagcgccaagcgcatggtcgagcggcagcgt
ccgcaggtgtgggacgtcctcgaagaggtcatcgccgagcatccggtgctgctcaaccgc
gcgccgacgctgcaccgcctgggtatccaggccttcgagccgcagctggtcgagggcaag
gcgatccagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgccgctgtccgccgaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctctcgcccgcgtcgggccgcccgctggccatgccgcgtctggac
atggtgaccggcctgtactacctgaccaccatggtcgagggcgacaagggcgagtacgcc
ccggccggcaaggatcagccggagaccggcgtgtacagctccccggccgaggccatcatg
gcgatggaccgcggtgcgctgagcgtgcgggccaagatccgggtgcggttgacgcatcag
cgtccgccgaccgagctcgaggccgagctgttcccggagggctgggagttcggtcggccg
tggacggccgagacgacgctgggccgcgtgatgttcaacgagctgttgccgccgacgtac
gcgttcatcaacgagcagatgcacaagaaggtgcaggcccggatcatcaacgatctggcc
gagcggttcccgatgatcgtcgtcgcgcagaccgtcgacaagctcaaggacgccggcttc
tactgggccacccgctcgggtgtcaccgtgtcgatggctgatgtgctcgttccaccgcag
aaacaggagatcctggagcggtacgaatccgaggccgacggcatcgagaagaagtaccag
cgcggcgcgctgaaccgcgacgagcgcaacgaggccctggtcaagatctggcaggacgcc
accgaagaagtcggtaaggcgctcgaggagttctaccccgaggacaacccgatcatcacg
atcgtgaagtccggagcgacgggtaacttcacccagacgcgcacgctggccggcatgaag
ggtctggtgaccaaccccaagggcgagttcatcccgcgtccgatcaagtcctcgttccgc
gagggcctgacggtgctggagtacttcatcaacacccacggcgcccgtaagggtcttgcg
gacaccgcgctgcgtaccgccgactcgggttacctgacccgacgtctggtcgacgtgagc
caggacgtcatcgtccgcgagaccgactgcgagaccgagcgcggcatcaccgtcacgctg
gccgagcaggccgaggacggcacgctggtgcgcgatcagcacatcgagacctcggcgtac
gcccggacgctggccaccgacgcggtcgacaccgacggcaacgtcgtcgtcgagcgcggc
cacgacctgggtgacccggcgatcgacgcgctgttggccgccggcatcaccgaggtcaag
gtccgctccgtgctgacgtgtgcaaccggcaccggcgtgtgcgcgatgtgctacggccgt
tcgatggcgaccggcaagctggtcgacatcggcgaggcggtcggcatcgtggccgcgcag
tccatcggtgagccaggcacgcagctgacgatgcgcaccttccaccagggtggtgtgacc
ggtggcgccgacatcgtcggtggtctgccccgtgtgcaggagctgttcgaggcccgcgtt
ccgcgtaaccgtgccccgatcgccgacgtcagcgggcggatccagctggaggagagcgac
aagttctacaagatcaccatcgtccccgatgacgggggcgaggaggtcgtgtacgacaag
ctctcgcggcgtcagcgcctgaaggtgttcaagcacgacgacggctccgagcgcctgctg
accgacggcgaccacgtcgaggtgggccagcagctgctggaaggctcggccgacccgcac
gaggtgctgcgcgtccagggcccccgcgaggtgcagatccacctcgtcaaggaggtccag
gaggtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtccgg
cagatgctgcgccgcgtcacgatcatcgattcgggtgcgacggagttcctgcccggctcg
ctgaccgagcgtggcgagttcgagaccgagaaccgtcgggtcgtcgccgagggtggcgag
cccgcggccggccgtccggtgttgatgggtatcaccaaggcgtcgctggccaccgattcg
tggctgtcggcggcgtcgttccaggagaccacccgcgtgctgaccgatgcggcgatcaat
tgccgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccg
gccggtaccggtatcaaccgctaccgcaacatccaggtgcagccgaccgaagaggcccgc
gctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccag
gccaccggtgccgcggtgccgttggacgactacggctactcggactaccggtaa
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integrated database retrieval system
