Mycobacterium dioxanotrophicus: BTO20_22215
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Entry
BTO20_22215 CDS
T05102
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mdx
Mycobacterium dioxanotrophicus
Pathway
mdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BTO20_22215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdx03019
]
BTO20_22215
Messenger RNA biogenesis [BR:
mdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BTO20_22215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ART70890
UniProt:
A0A1Y0C6N4
LinkDB
All DBs
Position
complement(4578874..4580550)
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AA seq
558 aa
AA seq
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MSTDLAPPEPLAPGGLRVTALGGISEIGRNMTVFEHLGRLLIVDCGVLFPGHDEPGVDLI
LPDLRHIEHRLDDVEALVITHAHEDHIGAIPFLLKLRPDIPVVGSKFTIALVREKCREHR
IKPVFVEVAERQSSTHGVFECEYFAVNHSIPGCLAVAIHTGAGTVLHTGDIKLDQMPLDG
RPTDLPGMSRLGDSGVDLFLCDSTNSEHPGVSPSESEVGPTLHRLIRGAEGRVIVACFAS
NVDRVQQIIDAAVALGRKVSFVGRSMVRNMGIARELGYLRVEDSDILDIGAAEMMPAQKV
VLITTGTQGEPMAALSRMSRGEHRSITLTAGDLIILSSSLIPGNEEAVYGVIDALAKIGA
RVVTNAQARVHVSGHAYSGELLFLYNGVRPRNVMPVHGTWRHLRANAALAARTGVPPENI
VIAENGVSVDLVAGRASISGAVTVGKMFVDGLITGDVGDATLGERLILSSGFVAVTVVVH
RGTGRPAGPAHLHSRGFSEDPKALESVAQKVERELESLAAENITDPTRIAQAVRRTVGKW
VGETYRRQPMIVPTVIEI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaccgatctcgcgccgcccgagccgctggcccctggagggctacgtgtcaccgcg
ctgggcggcatcagcgaaatcgggcgcaacatgaccgttttcgagcatctgggccggctg
ctcatcgtcgactgcggcgtgttgttccccggtcacgacgagccgggcgtcgacctgatc
ctgcccgacctgcggcacatcgagcatcgcctcgacgatgtcgaggcgctcgtcatcacc
catgcgcacgaggaccacatcggcgccatcccgttcctgctcaagctgcggcccgacatc
ccggtggtgggctcgaagttcaccatcgcgttggtgcgcgagaagtgccgcgaacaccgg
atcaaacccgtgttcgtggaggtcgccgaacgacagagcagcacgcacggcgtcttcgag
tgtgagtacttcgccgtcaaccactcgattcccgggtgtctggcggtcgcgatccacacc
ggcgcgggcacggtgctgcacaccggcgacatcaagctggaccagatgcccctcgacggt
cgtcccaccgacctgccgggtatgtcgcgccttggggactccggtgtcgacctgttcttg
tgtgattccacgaattctgagcatccgggcgtcagtccgtcggagagcgaggtgggcccg
acgctgcaccggctgatccgcggtgccgagggccgggtgatcgtggcgtgcttcgcgtcg
aacgtcgaccgggtgcaacagatcatcgacgccgcggtggccctgggtcgcaaggtgtcg
ttcgtcgggcgatcgatggtgcgcaacatgggcatcgcgcgcgagctcgggtatctgcgg
gtcgaggattccgacatcctcgacatcggcgcggccgagatgatgcctgcgcagaaggtg
gtactgatcaccaccggcacccagggcgaaccgatggcggcgctgtcgcggatgtcgcgc
ggtgagcaccgcagcatcacgctgaccgcgggcgacctgatcatcctgtcgtcgtcgctg
attccgggcaacgaggaggccgtctacggcgtgatcgacgcgctggccaagatcggggcc
agggtggtcaccaatgcccaagcgcgcgttcacgtttccggccacgcctactcgggcgaa
ttgctgttcctctacaacggtgtgcggccgcgcaacgtcatgccggtgcacggaacctgg
cggcacctgcgtgccaacgcggcgctggccgcccgcaccggggtgccgccggagaacatc
gtgatcgccgagaacggcgtcagcgtggacctggtcgcgggcagggcatcgatatccgga
gccgtgacggtcggcaagatgttcgtcgacggtttgatcaccggtgacgtcggcgatgcc
acgctcggtgaacggctcattctctcatcgggtttcgtcgcggtgaccgttgtcgtgcac
cggggcaccgggcgtcccgcggggccggcgcatctgcattcccgcggcttctccgaggac
cccaaggcgctggaatcggttgcgcagaaggtcgagcgcgaactggaaagccttgccgcg
gagaacatcaccgatcccaccaggatcgcgcaggcggtacggcgcacggtcggcaagtgg
gtgggcgagacctaccgtcgccagccgatgatcgtgccgaccgtgatcgagatctaa
DBGET
integrated database retrieval system