Methylorubrum extorquens AM1: Mex_1p3120
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Entry
Mex_1p3120 CDS
T00921
Symbol
rnd
Name
(GenBank) Ribonuclease D (RNase D)
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mea
Methylorubrum extorquens AM1
Brite
KEGG Orthology (KO) [BR:
mea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mea03016
]
Mex_1p3120 (rnd)
Enzymes [BR:
mea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Mex_1p3120 (rnd)
Transfer RNA biogenesis [BR:
mea03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Mex_1p3120 (rnd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ACS40868
UniProt:
C5AWL3
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All DBs
Position
complement(3257440..3258594)
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AA seq
384 aa
AA seq
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MELISATQALSDACTQFAAQPFVTVDTEFMRETTYYPKLCLIQMAGPDGFACLVDPLAKD
LDLKPFFDLMADESTVKVFHSARQDLEIIWLLGGLLPQPFFDTQVAAMVCGYGDSVSYEQ
LVNDVAKARIDKSSRFTDWSRRPLSEAQLAYALSDVTHLVTIYQVLAAELLSTDRGLWLD
EEMAVLTSPETYQAEPAQAWRRLAGRMRKPREIAVLMEVAAWREAEAQSRNVPRGRILKD
EAVIDIATAGPRSVEALGRLRTIPAGFERSRTGTEILAAVERGFARDPSQIAVPERSRSR
GGGNGALIDLLKVLLKAVAEAEGVAPKIIATVDDLEALAEDDAADVAVLQGWRRSLFGDK
ALALKHGRMALSVERGRVTVRELP
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatctccgcaacgcaggctctgtccgacgcctgcacccaattcgccgcgcag
ccgttcgtgaccgtcgatacggagttcatgcgcgagacgacctactatccgaagctctgc
ctgattcagatggccgggcccgacggattcgcctgcctcgtcgatccgctcgcgaaagat
ctcgatctcaagccgttcttcgacctgatggccgatgagagcaccgtgaaggtgttccat
tcggcccggcaggatctggagatcatctggctgctcggcgggctgctgccgcagccgttc
ttcgacacgcaggtcgcggccatggtctgcggctacggcgactcggtctcctacgagcag
ctggtcaacgatgtcgccaaggcgcgcatcgacaagtcctcccgcttcaccgactggtcg
cggcgccccctgtccgaggcgcagctcgcctacgccctgtcggacgtcacccatctcgtg
acgatctatcaggtgctcgcggccgaactgctgagcaccgaccgcggcctctggctcgac
gaggagatggcggtcctcacctcgccggagacctatcaggccgagcccgcccaggcgtgg
cgccggctcgcggggcgcatgcgcaaaccgcgcgagattgccgtgctgatggaagtggcc
gcgtggcgcgaggcggaggcccagagccgcaacgtcccccgcgggcgcatcctcaaggac
gaggcggtgatcgacatcgccactgccggcccccgcagcgtcgaggccctggggcgcctg
cgcaccatcccggccggcttcgagcgctcgcgcaccggcaccgaaatcctcgccgcggtc
gagcggggttttgcccgcgacccctcgcagatcgccgtgcccgagcgcagccgctcccgc
ggtggcggcaacggcgcgctcatcgaccttctcaaggtgctgctcaaggcggtggccgaa
gccgaaggcgtggcgcccaagatcatcgccaccgtcgatgacctcgaagcgctcgccgag
gacgacgcggcggatgtggccgtgctccagggctggcgccgctccctgttcggcgacaag
gctctggcgctcaagcacgggcgcatggcgctctcggtcgagcgcggccgggtcaccgtg
cgcgaactgccgtag
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