Methylorubrum extorquens AM1: Mex_1p4552
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Entry
Mex_1p4552 CDS
T00921
Symbol
mfd
Name
(GenBank) transcription repair coupling protein, ATP-dependent helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mea
Methylorubrum extorquens AM1
Pathway
mea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mex_1p4552 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mea03400
]
Mex_1p4552 (mfd)
Enzymes [BR:
mea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mex_1p4552 (mfd)
DNA repair and recombination proteins [BR:
mea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mex_1p4552 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
AAA_16
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACS42182
UniProt:
C5AQC2
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All DBs
Position
4666602..4670192
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AA seq
1196 aa
AA seq
DB search
MAKPQPKPPAPKPQTARFALPKSAPLTKALDAIKRGDSPTLASVPDGFDALVAADLARAL
SGSFEGPAVLVHVARDSGRSNAFQNALKFVAPEIEAMSVPAWDCQPYDRVSPNGAIAAQR
MTALSRLTRSRSSEEKPRILCTTVNALVQRVPPRSRVAVETFSAAIGNVVPMDKVVAWVE
ANGFLRTGTVRDTGEYAVRGGILDLSPPGLPNPIRLDFFGDTLESIRAFDPETQRTVGSL
RSLDLVPMSEVQLTTETIRRFRQGYLSSFGAATRDDRLYETVSEGRRYAGLEHWMPLFYD
GLDTLFDYLGDVPMLFDPQVEEAATERLALIQDYFQAREAALKNPQSGVAPYKPLPPRAL
YLTPNEWKSKVESGTVVRLTPFATPDSDERAVIDCGARAGRSFAPERADDAASVFDAAVA
HIRDLQASGHHVILGSWSEGSRDRLCGVLTDHGLKKPTVINTFAAVNALKRGTDVAVAVW
GLESGFTLDRLAVVAEGDILGDRLVRQKRKSKRPQDIILEVQALQPGDLVVHADHGIGRF
VTLKTVTAAGAPHDCLELQYAGGLLLLPVENIELLTRYGSEDSEVALDRLGGGAWQARKA
KMKRRILEMAGDLIKIAAARFVKSAPSLKAPEGLYEEFAARFAFQETEDQANAIDAVLDD
LNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPTTLLARQHFRTFAERFKG
LPINVAQLSRFVSAGEQRQNRAGLADGTVDIVVGTHALLAKNVAFKDLGLIIVDEEQHFG
VAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPMDRLAVRTFVTPFDP
LLVREALLRERYRGGQSFYVAPRIEDLAEVKRFLDTEMPETTVAVAHGQMAAGQLEDVMT
AFYEGKYDVLLSTTIVESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYALFT
TPANRQLTTQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYELY
QQMLEDAVTALKAGIEEPVEEAWSPTIALGAPVTIPEDYVEDLTVRLGLYRRLSTLENDA
EMESFGAELIDRFGPLPPEVEQLLKIVTIKILCRDANVEKVEAGPKGVVVHFRNRSFANP
QGLAAMVVEQGSFAKVRPDMSVVFIRELDGIPRRLKETTQILRGLVTIAKRAKKAA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccccaacccaagccacccgctccgaagccgcagaccgcgcgcttcgccctg
ccgaaatcggcgccgctcaccaaggcgctcgatgcgatcaagcgtggcgacagcccgacg
ctggcgagcgtccccgacggcttcgatgcgctggtggccgccgacctcgcccgcgcgctg
tccggttcgttcgaggggccggcggtgctggtccacgtcgcccgcgattccggccgctcc
aacgccttccagaacgcgctgaaattcgtcgcccccgagatcgaggcgatgagcgttccg
gcctgggactgccagccctacgaccgggtctcgccgaacggggccatcgccgcccagcgc
atgaccgcgctgtcgcggctgacccgttcgcgctcgtcggaagagaagccgcgtattctc
tgcaccaccgtcaacgctctggtgcagcgggtgccgccgcggtcgcgcgtggccgtcgag
accttctcggcggcgatcggcaacgtcgtgccgatggacaaggtcgtggcctgggtggaa
gcgaacggcttcctgcgcacgggaacggtgcgggatacgggcgaatacgccgtgcgcggc
ggtatcctcgacctgtcgccccccggcctgccgaacccgatccgcctcgacttcttcggc
gacacgctcgaatcgatccgcgccttcgatccggagacgcagcgcacggtggggtccttg
cgctccctcgacctcgtgccgatgagcgaggtgcagctcaccaccgagacgatccggcgc
ttccggcagggctatctgtcgagcttcggcgcggcgacccgtgacgaccggctctacgag
acggtgagcgagggccggcgctatgccggcctcgagcactggatgccgctgttctacgac
ggcctcgacaccctgttcgactatctcggcgacgtgccgatgctgttcgacccgcaggtg
gaggaggcggccaccgagcggctggccctgatccaggactatttccaggcccgcgaagcg
gcgctcaagaacccgcagagcggcgtcgcgccctacaagccgctgccgccgcgcgcgctc
tacctcacgcccaacgagtggaagagcaaggtcgagtccggcacggtggtccggctcacc
cccttcgcgacgccggattccgacgagcgcgcggtcatcgattgcggcgccagggccggg
cgaagcttcgcgcccgagcgggccgacgacgcggccagcgtgttcgacgcggccgtcgcg
catatccgggatctccaagcatccgggcatcacgtgatccttggatcctggtccgagggc
tcgcgcgaccggctctgcggcgtgctgaccgaccacgggctcaagaagccgacggtgatc
aacaccttcgccgcggtcaacgcgctcaagcgcggcaccgatgtggcggtcgcggtctgg
gggctggaatccggcttcaccctcgaccggctcgcggtggtggccgagggcgacatcctg
ggcgaccggctggtgcgccagaagcgcaagtccaagcgcccgcaggacatcatcctggag
gtgcaggcgctccagcccggcgatctcgtggtccatgccgaccacggcatcggccgcttc
gtcaccctcaagaccgtcaccgcggcgggcgcgccgcatgactgcctcgaactgcaatat
gccggcggcctgctgctgctgccggtcgagaacatcgagctcctgacccgctacggctcc
gaggattcggaggtcgcgctcgaccgcctcggcggcggggcgtggcaggcccgcaaggcc
aagatgaagcgccgcatcctcgagatggccggcgacctcatcaagatcgccgccgcgcgg
ttcgtgaagtccgcccccagcctcaaggcgccggaggggctctacgaggaattcgccgcc
cgcttcgccttccaggagaccgaggatcaggccaacgccatcgacgcggtgctcgacgac
ctcaatgcggggcgtccgatggaccggctcgtctgcggcgatgtcggcttcggcaagacc
gaggtggccctgcgcgccgcgttcgcggcggcgatctccggcaagcaggtggcggtggtg
gtgcccaccacgctactcgcccgccagcattttcgcacgtttgccgaacggtttaaggga
ctgccgatcaacgtcgcgcagctctcccgctttgtctcggcgggcgagcagcgccagaac
cgggccgggctcgccgacggcacggtcgatatcgtcgtcggcacccatgccctgctcgcc
aagaacgtcgcgttcaaggatctcggcctcatcatcgtcgacgaggagcagcatttcggc
gtcgcccacaaggagcggcttaaggcgcttcaggccgacgtgcacgtgctgacgctctcg
gccaccccgattccgcgcaccctgcagctcgccatgacgggtgtgcgcgaactctcgatc
atcgccacgcccccgatggaccggctggcggtgcggaccttcgtgacaccgttcgatccg
ctgctggttcgcgaggcgctgctgcgcgaacgctatcgcggcggccagtcgttctacgtc
gccccgcgcatcgaggatctggccgaggtcaaacgcttcctcgacaccgagatgcccgag
accaccgtcgcggtcgcccacggccagatggcggcgggccagctcgaggacgtgatgacg
gcgttctacgagggcaagtacgacgtgctgctctcgaccacgatcgtcgaatctggcctc
gacatcccgaccgccaacacgctgatcgtgcaccgggccgacatgttcggtctggccgcg
ctctaccagttgcgcgggcgtgtcggccgctcgaaggcgcgggcctacgccctgttcacg
acgccggccaaccgccagctcacgacccaggccgaacagcgcctgaaggtgctccagagc
ctcgacacgctgggcgccggcttccagctcgcgagccacgatctcgacatccgcggcgcc
ggcaacctcctgggcgatgcccagtccggccacatcaaggaagtcggctacgagctctac
cagcagatgctggaggatgcggtcaccgccctcaaggccggcatcgaggagccggtggag
gaggcgtggtcgccgaccatcgcgctcggcgctccggtcacgatccccgaggattacgtc
gaggatctgaccgtccggctcggcctataccggcgcctctcgaccctcgagaacgatgcc
gagatggagagcttcggtgccgagctgatcgaccgtttcggcccgctgccgccggaggtg
gaacagctcctgaagatcgtgaccatcaagatcctgtgccgcgacgccaatgtcgagaag
gtcgaggccgggccgaagggcgtggttgtccacttccgcaaccgttccttcgccaacccg
caagggctcgccgccatggtcgtggagcagggctccttcgccaaggtgcggcccgacatg
agcgtcgtgttcatccgcgagctcgacggcatcccgcggcggctgaaggagacgacgcag
atcctgcgcgggctcgtcacgatcgccaagcgggccaagaaggccgcctga
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