Methylorubrum extorquens AM1: Mex_1p4894
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Entry
Mex_1p4894 CDS
T00921
Name
(GenBank) putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mea
Methylorubrum extorquens AM1
Pathway
mea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mex_1p4894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mea03019
]
Mex_1p4894
03009 Ribosome biogenesis [BR:
mea03009
]
Mex_1p4894
Enzymes [BR:
mea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mex_1p4894
Messenger RNA biogenesis [BR:
mea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mex_1p4894
Ribosome biogenesis [BR:
mea03009
]
Prokaryotic type
rRNA helicases
Mex_1p4894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACS42503
UniProt:
C5ASP0
LinkDB
All DBs
Position
5009616..5011322
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AA seq
568 aa
AA seq
DB search
MPFPSLPSPLARALTERNYAEPTPVQQAVLDAVPERDLLVSAQTGSGKTVAFGLAIAGTL
LGEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALE
AGVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRT
LLFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYV
DAPVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATD
VAARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAI
AKVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAA
AFARLYRSRIPVPEEVSDPAYETSRRPDSRSSVPVGASRVGDDEPAAWFRLNLGRRDRAE
PRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEVRASAADDFAASFARRGPADVRVERMQG
DGPAAAKAPKSPRAQRHRREATKTGRGG
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
ttgccatttccgtctctgccctcccccctggcgcgggcgctcaccgagcgcaactatgcc
gagccgacacccgtccagcaggcggtgctcgatgccgtcccagagcgcgacctgctcgtt
tcggctcagaccggatcgggcaagaccgttgccttcggtctcgccatcgccggtacgctg
ctcggcgaggacgaaacgctgccgccgcccggcgcgccgctggcgctcgtcatcgctccg
acccgtgagctggcactccaggtgcagcgggagctgacctggctctacgcgcagaccggc
gcgcgcatcgtcccttgcgtcggcggcatggatccgcgccgcgaggcccgcgcgctggag
gccggcgtccacatcgttgtcggcacgccggggcgcctgcgcgaccacatggagcgcggc
cggctcgtcaccgaaggtcttcgcgccgtcatcctcgacgaggccgacgaaatgctcgac
atgggctttcgcgaggatctcgaattcatcctggcatcgaccccgaaggaccggcgcacc
ctgctgttctcggcgaccctgccgaaggccatcgtcgcactcgccgagagctaccagcgc
gacgccctgcgcctcgcggtcgccggcgagacccgcggccatgccgacatcgtctaccgc
gcggtgcgggtgatgccgcgggaggtcgagcacgccgtcgtcaacattctgcgctacgtt
gatgcgccggtggcgatcgtgttctgcaacacccgtgacggcgtgcgccatctccaggcc
tcgctgaccgagcgcggcttctccgccgtggcgctctcgggcgaactcggccagggcgag
cgcaacgccgcgctccaggccctgcgcgacggccgcgcccgtgtctgcgtcgccaccgac
gtcgccgcccgcggcatcgacctgccgggcctcgacctcgtcatccacgccgaccttccg
cacgatgccgaggtgatgcagcaccgctccggccgcaccggccgcgccggccgcaagggg
acgagcgtcgtgctcgtgccgccggccaagcggcggcgggccgagcagatgttcgccatc
gccaaggtcagtcccgattggagcggcccgccgaacgcggacgaaatccgcatcctcgac
cgcgagcggatgatgtccgatccgctgctcgccgagcccgagacggaagaggaccgcgag
tgggagcgggaatgggccgaggcgctgatggagcgctgcccgcccgagcgtctggccgcg
gccttcgcccggctctaccgctcgcgcatccccgtgccggaggaggtgagcgatccggcc
tacgagacgagccggcgtccggattcccgcagcagtgtgccggttggcgcgtcgcgggtc
ggtgacgacgagccggcggcgtggttccggctcaatctcggccgccgcgaccgggccgag
ccgcgccgccttctgccgatgctgacccgccgtgggcagatcggccgcggcgatatcggt
tccatccggatcttcgacaacgagacgaccttcgaggtccgcgccagcgcggcggacgac
ttcgccgcgtccttcgcccggcgtgggcccgccgatgtccgcgtcgagcggatgcagggg
gatggaccggccgccgccaaggcgccgaagagcccccgcgcccagcgccatcgccgcgag
gcgaccaaaaccggccgaggcggctga
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