Mesorhizobium sp. AaZ16: ACG873_08785
Help
Entry
ACG873_08785 CDS
T10854
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
meaa Mesorhizobium sp. AaZ16
Pathway
meaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACG873_08785 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meaa03021
]
ACG873_08785 (rpoC)
03400 DNA repair and recombination proteins [BR:
meaa03400
]
ACG873_08785 (rpoC)
Enzymes [BR:
meaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACG873_08785 (rpoC)
Transcription machinery [BR:
meaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACG873_08785 (rpoC)
DNA repair and recombination proteins [BR:
meaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACG873_08785 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Phage_cement_4
Motif
Other DBs
NCBI-ProteinID:
XIK07292
LinkDB
All DBs
Position
1386895..1391091
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNNNAPAQVFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLSEEEYMMAVDEYGEDQFTA
MIGAEAIHDLLAGMDLEKIAGDLRSELASTTSELKQKKYLKRLKVVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMVFADMGELQHALE
TKAVTLHSKIRGRFRTVDAEGNVVSKIHDTTPGRMIIAELLPKNVNVPFETANQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMALGFSHACKAGISFGKDDMLIPDSKIKLVSDTEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMARIKAVEFEDNGRQKPMNSIYM
MSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSIDCGTDKGLTMQPIVDAGQVVASLGQRILGRTA
LDDINHPVTGDLIVKAGTLMDERDIELIEKAAIQSVRIRSALTCEVRTGVCAVCYGRDLA
RGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSFLEASYEGTVEIRNRNV
VRNSDGQQMVMGRNMAVLILDEAGKERATHRVTYGSRIFVDDGDKVKRGQRIAEWDPYTR
PILTEIEGRVVFEDLVDGISVQETADESTGITKREVIDWRSTPRGSDLKPALAIHDVKGK
VGKLAKGGDARFLLSVEAILSVEPGSMVRPGDVIARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAELDGTIRFGRDYKNKRRIIIEPHDSTLEPVEYLIPKGKPFHLQDGDAIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TVQGDSTYIPGDHVDVIELEEVNDRLVEEGKKPAEGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDMLQGLKENVIVGRLIPAGTGGQMSQIRRIATSRDELIIDERRKS
SGAETAEPMLTDMTNAAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaacaacaacgccccggcgcaggtgttcgattcc
atccggatttcgctcgccagcccggaaaagattctgtcctggtcgttcggcgagatcaag
aagccggaaacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgcg
cgcatttttggcccgatcaaggactacgaatgcctgtgcggcaaatacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtcacgctgtcgcgcgtccgccgc
gagcgcatgggccatatcgagctcgccgccccggtggcgcacatctggttcctcaagtcg
ctgccgtcgcgcatcggcacgctgctcgacatgacgctgaaggacatcgagcgggttctc
tatttcgagaactacatcgtcaccgagccgggcctgacagcgctgaaggagcaccagctt
ctcagcgaagaagaatacatgatggccgtcgacgagtatggcgaggaccagttcaccgcc
atgatcggtgcggaagccattcatgacctgctggccggcatggatctggaaaagatcgcg
ggcgacctgcgctccgagcttgcctcgaccacgtcggaactaaagcagaagaaatatctg
aagcggctgaaggtcgtcgaaaacttcatggaatccggcaaccgtccggaatggatgatc
atgaaggtcgtccccgtgatcccgccggacctgcgcccgctcgtcccgttggatggcggc
cgctttgcgacgtcggacctgaacgatctctaccgacgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgggcgccaggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaggcggtcgacgctctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgatatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgattattccggccgttcggtcatcgtgaccggt
ccggaattgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgcccgcctcgacgccaagggttattcctcgaccgtcaagcaggccaag
aagctggtcgagaaggagaagccggaagtctgggatatcctcgacgaggtcatccgcgaa
catccggtgctgctcaaccgcgcgccgacgctgcaccgcctcggcattcaggcgttcgag
ccgatcctgatcgaaggcaaggcgatccagcttcacccgctggtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaggctcagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcatccggcttccggcgcgccg
atcatcgtgccgtcgcaggacatggtgcttggtctctattacctgtcgatcgtcaaccag
aacgagccgggcgagggcatggtgtttgccgacatgggcgaactccagcacgcgcttgag
acgaaggctgtcactctgcattccaagatcaggggccgcttccgcaccgtggacgctgaa
ggcaatgtcgtatcgaaaatccacgacacgacgcccggccgcatgattatcgccgagctt
ctgccgaagaacgtcaacgtgccgttcgagaccgccaaccaggagatgaccaagaagaac
atctccaagatgatcgacaccgtctatcgccattgcggtcagaaggagacggtcattttc
tgcgatcgcatcatggcgctcggcttcagccatgcctgcaaggccggcatttcattcggc
aaggacgacatgctgatcccggattccaagatcaagctggtgtccgacaccgaggcgctc
gccaaggaatacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctgggcgaagtgctcggaaaaggtcgccgacgagatgatggcccgc
atcaaggccgtcgagttcgaggacaacggccgccagaagccgatgaactcgatctacatg
atgagccactccggcgcccgcgggtccccgacccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccttcgggcgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgtccttgaatacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagactgcgaactcgggttacctgacgcgccgtctcgtcgacgtggcg
caggactgcatcgtcaactcgatcgactgcggcaccgacaagggcctgaccatgcagccg
atcgtcgatgccggccaggtggtcgcgtcgctcggccagcgcatcctcggccgcactgcg
ctcgacgatatcaatcacccggtgacgggcgatctgatcgtcaaggcgggcacgctgatg
gacgagcgcgacatcgagctgatcgagaaggccgccatccagtcggtccgcatccgttcg
gcgctgacctgcgaggtcaggaccggcgtctgcgcggtctgctacggacgcgatctggcg
cgcggcacgcccgtcaaccagggcgaggcagtcggcgtcatcgcagcgcagtcgatcggc
gagccgggcacgcagctcaccatgcgtacgttccacatgggcggcacggctcaggtcgtc
gatagctcgttcctggaagcgtcgtatgaaggcacggtcgagatccgcaaccgcaacgtg
gttcgcaactccgacggccagcagatggtcatgggccgcaacatggcggtcctgatcctc
gacgaagccggcaaggagcgcgccacgcaccgcgtcacctatggttcgcgcatcttcgtg
gacgatggcgacaaggtgaagcgcggccagcgcatcgccgagtgggacccgtacacccgc
ccgatcctcaccgaaatcgagggcagggtggtgttcgaggatctggtcgacggcatctcc
gtccaggaaaccgccgacgagtcgaccggtatcaccaagcgtgaggtcatcgactggcgt
tcgaccccgcgtggctcggatctcaagccggcgctcgcaattcacgacgtcaagggcaag
gtcggcaagctcgccaagggcggcgacgcccgcttcctgctctcggtcgaggcgatcctg
tcggtggaacccggctcgatggtgcgcccgggcgacgtgattgcgcgtattccgatggaa
agcgcgaagaccaaggacatcaccggcggtctgccgcgtgttgccgagctcttcgaagcg
cgccgtccgaaggaccacgccatcatcgccgaactcgacggcacgatccggtttggccgc
gactataagaacaagcgccgcatcatcatcgagccgcatgactcgacgcttgagccggtc
gaatacctgatcccgaaaggcaagccgttccatctccaggacggcgacgcgatcgagaag
ggcgactacatcctcgacggcaatccggcgccgcacgacatcctggcgatcaagggcgtg
gaggctctagcctcgtatctcgtcaacgagatccaggaagtctaccggttgcagggcgtc
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatt
acggtgcagggcgattcgacctacatcccgggcgaccacgtcgacgtgatcgagctggaa
gaggtcaacgatcgcctggtcgaggagggcaagaagcccgccgaaggccagccggtgctg
ctcggcatcaccaaggcctcgctgcagacgccatccttcatctcggccgcttccttccag
gagacgaccagggtgctgacggaagcggcggtggccggcaaaaccgacatgctgcagggc
ctgaaggaaaacgtcatcgtcggccgccttatcccggcgggcacgggcggtcagatgagc
cagatccggcgcatcgccacctcgcgcgacgagctgatcatcgacgagcggcgcaagtcg
tcgggcgccgagacagccgagccgatgcttaccgacatgaccaacgccgcggaataa
DBGET
integrated database retrieval system
