Mesorhizobium sp. AaZ16: ACG873_17520
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Entry
ACG873_17520 CDS
T10854
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
meaa Mesorhizobium sp. AaZ16
Pathway
meaa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
meaa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACG873_17520 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meaa03021
]
ACG873_17520 (rpoD)
Transcription machinery [BR:
meaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACG873_17520 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF3106
PIN_10
Motif
Other DBs
NCBI-ProteinID:
XIK03546
LinkDB
All DBs
Position
complement(3156626..3158662)
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AA seq
678 aa
AA seq
DB search
MAKPEKEEVETEREAVTDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQ
IEDTMSMLSDMGINVVEDDETGEEAEGEPTAADAEEDANELAEQTGTAVAATTTKKEPTD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELN
EAKILLREIIDLEATYAGPEAKQAPTPERQEELERPKTPEHSQRRPSVREDDDITNVGGD
MRGLAEEEDDDEDEASLSLAAMEAELRPQVMETLDVIADTYKKLRKLQDQQVENRLAAAG
TLSPSQDRRLKELKDQLVKAVKSLSLNNARIESLVEQLYDINKRLVQNEGKLLRLAESYG
VRRESFLQEYQGSELDPNWIKSISNLSARGWKEFTKNEKDTIRELRAEIQNLATETAISI
QEFRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIG
REPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAILPIDAA
IQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKAL
RKLKHPSRSRKLRSFLDS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaccagagaaggaagaggtcgaaaccgaacgcgaagcggtcaccgatggccct
ttgctcgacctttccgatgacgctgtcaagaagatgatcaaggccgcaaagaagcgcggc
tatgtgaccatggacgaactgaactcggtgctgccgtcggaggaagtgacctccgagcag
atcgaggacaccatgtccatgctgtccgacatgggcatcaacgtcgtcgaggatgacgag
accggcgaagaggccgaaggcgaacccaccgcggccgatgccgaggaggacgccaacgag
cttgccgagcagaccggcacggcggtcgccgctaccaccaccaagaaagagccgacagac
cgcaccgacgacccggtgcgcatgtacctgcgcgagatgggctcggtcgagctcctgtcg
cgcgagggcgaaatcgccattgccaagcgtatcgaggctggccgcgagacgatgatcgcg
ggcctgtgcgaaagcccgctgaccttccaggcaatcattatctggcgcgacgagctcaac
gaagcgaaaatcctgctgcgcgagatcatcgatctcgaggcaacctatgccgggcccgag
gccaagcaggcgccgacgcccgagcgccaagaagaactcgagcggccgaagaccccggag
cacagccagcgccggccttccgtgcgcgaagacgacgacatcaccaatgtcggcggcgac
atgcgtgggctggccgaggaggaagatgacgacgaggacgaggcctcgctgtcgctggcc
gccatggaggcggaactgcggccgcaggtcatggagacgctcgacgtcatcgccgacacc
tacaagaagctgcggaagctgcaggaccagcaggtcgagaaccggctggcagcggccggc
acgctgtcgcccagccaggaccggcggctcaaggagctgaaggaccagctcgtcaaagcg
gtgaagtcgctgtcgctcaacaatgcgcgcatcgaatcgctggtggagcagctctacgac
atcaacaagcgtctcgtgcagaacgagggcaagcttctcaggctcgccgagagctacggc
gtgcgccgcgaaagcttcctgcaggagtaccagggctcggaactcgatccgaactggatc
aagtcgatttccaacctgtcggcgcgcggctggaaggaattcaccaagaacgagaaggac
acgatccgcgagctgcgtgcggaaatccagaacctcgccaccgagacggcgatctcgatc
caggaattccgcaagatcgtcaatcaggtgcagaagggcgagcgcgaggcggccatcgcc
aagaaggagatggtcgaggccaatctgcgcctcgtcatctcgatcgccaagaaatacacc
aatcgcggcctgcaattcctggatctcatccaggaaggcaatatcggcctgatgaaggcg
gtcgacaaattcgagtaccgccgcggctacaagttctcgacctacgccacgtggtggatc
aggcaggcgatcacccgctcgatcgccgaccaggcgcgcaccatccgcatcccggtgcac
atgatcgagacgatcaacaagatcgtcaggacctcgcgccagatgctgcatgagatcggc
cgcgagccgacgccggaggaactggccgagaaactggccatgccgctcgaaaaggtccgc
aaggtcttgaaaatcgccaaggagccgatctctctcgaaacgccggtcggcgacgaggag
gacagccatctcggcgatttcatcgaggacaagatggcaatcctgccgatcgatgcggcg
atccaggccaacctgcgcgagacgacgacgcgcgtgctggcgtcgctcaccccgcgcgag
gaacgcgttctgcgcatgcgcttcggcatcggcatgaacaccgaccacacgctggaagaa
gtcggccagcagttctcggtgacgcgcgagcgcatccgccagatcgaggccaaggcgctg
cgcaagctgaagcatccgagccggtcgcggaagctgaggagcttcctggacagctag
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