Methanonatronarchaeum sp. AMET-Sl: QEN48_05240
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Entry
QEN48_05240 CDS
T09224
Symbol
rrp4
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
meae
Methanonatronarchaeum sp. AMET-Sl
Pathway
meae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEN48_05240 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meae03019
]
QEN48_05240 (rrp4)
Messenger RNA biogenesis [BR:
meae03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
QEN48_05240 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
QEN48_05240 (rrp4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N_2
ECR1_N
RRP4_S1
KH_1
S1
RRP40_S1
KH_2
RRF_GI
KH_KRR1_2nd
Motif
Other DBs
NCBI-ProteinID:
WGI16904
LinkDB
All DBs
Position
1036156..1036824
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AA seq
222 aa
AA seq
DB search
MVHRETVIPGEKISTKLKPGKNTYKEGNNIYSTIYGFKNKRNDTIEVLPIKSKYIPKKGD
KVIGIVTDISFNNWFLDINSPYDARLPVSLHPEYIESGDLNQHIEIGDAAIIEIVEVDKE
LQADANMDGKELKKITQGTITQITPTKVPRVIGKNASMISMLKRETDCEIYVGQNGRIWI
NGEKQNIDKVTKAIQMIEKEAHKSGLTNKIKTYLKNNQQQEK
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atggtacaccgagaaaccgtaatacccggcgaaaaaatatcaacaaaactaaagccaggg
aaaaacacctacaaagaaggaaacaacatatactcaaccatatatggattcaaaaacaaa
agaaacgacacaatagaagtactaccaataaaatccaaatacataccaaaaaaaggagac
aaagtcataggaatcgtaacagacataagcttcaacaactggttcctagacataaactca
ccatacgacgcaagactacccgtatcactacacccagaatacatcgaatcaggagaccta
aaccaacacatagagatcggagacgcagcaataatcgagatagtagaagtcgacaaagaa
ctgcaagcagacgcaaacatggacggcaaagaactcaaaaaaataacccaaggaacaatc
acacagataacaccaacaaaagtaccaagagtaataggcaaaaacgcatccatgatatca
atgctcaaaagagaaacagactgcgaaatatacgtaggacaaaacggcagaatctggatc
aacggagaaaaacaaaacatcgataaagtcaccaaagcaatccagatgatagaaaaagaa
gcacacaaatcaggcctaacaaacaaaatcaaaacatacctaaaaaacaaccaacaacaa
gaaaaataa
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