Methanonatronarchaeum sp. AMET6-2: MU439_02205
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Entry
MU439_02205 CDS
T08077
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
meam
Methanonatronarchaeum sp. AMET6-2
Brite
KEGG Orthology (KO) [BR:
meam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meam03016
]
MU439_02205
Enzymes [BR:
meam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MU439_02205
Transfer RNA biogenesis [BR:
meam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MU439_02205
Prokaryotic type
tRNA splicing ligases
MU439_02205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Phosphorylase
Motif
Other DBs
NCBI-ProteinID:
UOY10468
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All DBs
Position
complement(431483..432919)
Genome browser
AA seq
478 aa
AA seq
DB search
MKRDNLNKIDDYTWEISDSYKRCMNVPGRMYLSDSLVDIVEEDTYEQVSNVACLPGIVKY
SLAMPEAHLGYGFPIGGVAGIDSEEGVISPGGVGFDINCGVKTLKTNLMLDDVKGDVESL
INKLFEKIPSGVGSESKLKLSHDELDRLLENGLNWAYENGYAEKKDLEHCEEEGCLETAD
ADKVSNKAKKRGLTQVGTLGSGNHFLEVQYVDKVLEDNTASSFGLSEGQVVVMVHTGSRG
FGHQVCTDYVKKLEKATKKYDIEIPDKQLACAPFNSKEGQDYFAAMACAANYAWVNRQVI
TNWVREVFEGHFGGDTRLETLYDVAHNMAKKETHDVDGSKKDLIVHRKGATRAFGPGHSE
IPSDYRDTGQPVMIPGNMGSPSYILRGTDFAMKNTFGSTCHGAGRKMSRSQAKKEYWGET
VQKELSKEEIYVRATHGSVIAEEAPGAYKNPDEVVNVAHNVGISKKVAKLRPLGVAKG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagataacctgaataaaattgatgattatacttgggagatttccgatagctac
aagagatgtatgaacgttccagggaggatgtacctcagtgacagtctggtagatatagtt
gaggaggatacctatgaacaggtttcaaacgttgcttgtctccccggaatagttaaatac
tcccttgctatgcctgaagctcatctgggatatggattcccgataggaggagtagcaggt
attgacagtgaagaaggagttataagcccgggtggggttggtttcgacataaactgtggg
gttaaaacactcaaaacaaacctcatgctggatgatgttaaaggtgatgttgaaagcctt
ataaacaagcttttcgagaaaataccctcaggagtgggttcagaaagtaaattaaagttg
agccatgatgaacttgacaggttacttgaaaatggtttgaactgggcctacgaaaatgga
tatgcagaaaagaaggatctggaacactgtgaagaggagggttgtcttgaaaccgccgat
gcagacaaggtaagtaacaaagctaagaaaagggggttgacccaggtaggtacgttgggc
agtggaaaccacttcctcgaggtccagtatgttgacaaggtgcttgaagacaacacagca
agcagtttcggtctttcagaaggacaggttgtcgttatggtgcacacaggtagccgtggt
ttcggccatcaggtatgcacagactatgtcaagaagctggagaaggcgacgaagaagtat
gacatagaaataccagataaacagcttgcgtgtgctccatttaactcgaaggaggggcag
gattacttcgcagctatggcttgtgcagcgaactacgcttgggtgaacagacaggttata
accaactgggttcgtgaagtgtttgaaggccatttcggtggtgacacaaggcttgaaaca
ctttatgacgtcgcacataacatggctaaaaaagagacacacgatgtcgatggcagtaaa
aaggatttgatagttcatcgaaaaggagctacgagagcttttgggccaggccacagtgaa
atcccaagtgattatcgagatacaggccagccggtaatgatacccgggaacatgggttct
ccatcctacatactaaggggtacggacttcgcaatgaaaaatacatttggatccacatgc
cacggtgcaggacggaagatgagtcgttctcaagctaagaaggagtattggggagaaacc
gtacagaaagagctttcaaaagaagagatctacgttagagccacacatggatcagtaatc
gctgaagaggctccaggagcatacaaaaatcctgatgaggttgttaacgtagctcacaac
gtgggtatctcaaaaaaagtagcgaagttaaggcccttgggcgttgcaaagggatga
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