Methanonatronarchaeum sp. AMET6-2: MU439_04925
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Entry
MU439_04925 CDS
T08077
Symbol
rrp4
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
meam
Methanonatronarchaeum sp. AMET6-2
Pathway
meam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MU439_04925 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meam03019
]
MU439_04925 (rrp4)
Messenger RNA biogenesis [BR:
meam03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MU439_04925 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MU439_04925 (rrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N_2
KH_1
RRP4_S1
RRP40_S1
ECR1_N
KH_2
S1
KH_KRR1_2nd
HAS-barrel
Motif
Other DBs
NCBI-ProteinID:
UOY09600
UniProt:
A0A8T9VL82
LinkDB
All DBs
Position
complement(933111..933764)
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AA seq
217 aa
AA seq
DB search
MVHRETVIPGEKIGENLEPGKNTIKEGNQIYSTIYGFKNKRNNTVEVLPIKSKYIPNEGD
KVIGIVTDISFNNWFLDINSPYDARLPVSLHPDYIESGDLDQHLEIGDAAIIEIVDVDEE
LQADANMDGKELKKISTGTITQITPTKVPRVIGKNASMISMLKRETDCQIYVGQNGRVWI
DGEKQNIEKVIKAINMIEEEAHKSGLTNKIKTFLKQN
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atggttcatagagaaaccgtaatccccggagaaaaaataggtgaaaacctagagcccggt
aaaaacacaatcaaagaaggaaaccagatctactccaccatatatggattcaaaaacaaa
agaaacaacacagtagaagtactcccaataaaatcaaagtacatacccaatgagggtgac
aaggtaatcggaatcgtaaccgacataagcttcaacaactggttcttagacataaactca
ccctacgacgcccgactacccgtatcactacaccccgactacatagagtccggagacctc
gaccaacacctcgagatcggggacgcagcaataatcgagatagtagacgtcgatgaagaa
ctgcaggccgacgcaaacatggatggaaaggaactcaagaaaatatcaacaggaacaata
acacagatcacaccaacaaaagtacccagagtgatagggaaaaacgcctcaatgatatcg
atgcttaaaagagaaacagactgccagatatacgtaggtcagaacggcagagtatggata
gatggagaaaaacaaaacatcgagaaggtaataaaagcaataaacatgatagaggaagaa
gcccataaatcagggcttacaaacaaaataaagacattcctcaaacaaaactaa
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