Mercurialis annua (annual mercury): 126660418
Help
Entry
126660418 CDS
T10153
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03018
RNA degradation
Brite
Enzymes [BR:
mean01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126660418
Messenger RNA biogenesis [BR:
mean03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126660418
Spliceosome [BR:
mean03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126660418
Complex C
U4/U6.U5 tri-SnRNP related factors
126660418
Ribosome biogenesis [BR:
mean03009
]
Eukaryotic type
Pre-60S particles
Helicases
126660418
Transfer RNA biogenesis [BR:
mean03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126660418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126660418
NCBI-ProteinID:
XP_050209869
LinkDB
All DBs
Position
LG8:complement(5368136..5378819)
Genome browser
AA seq
991 aa
AA seq
DB search
MAAVKRKSADGLSEESLPSCKQKRENGVVNGNELVACLHDVSYPEGYVQPLPCSDSSVQN
DIKPAKEFPFTLDPFQSEAIKCLKKGESVMVSAHTSAGKTVVALYAIAMSLKNQQRVIYT
SPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEITREVAW
VIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVY
TDYRPTPLQHYIFPAGADGLYLVVDDKGKFREDSFQKAVNALVPKSEGEKKRENGKWQKG
LVVGKLGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNEDDEKANIET
IFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFAT
ETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDDRGVCILMVDEK
LEPATAKMMLKGSADSLNSAFHLSYNMLLNQMRSEDGDPENLLRNSFYQFQADRAIPDLE
KQVKDLEEEKNSMIIEEEENLKNYYDLIQQYRSLKTDARNIVFSPKYCLPFLQPGRILCM
QCTADENSPSFSFEDHLTWGVIISFEQVKSFSEDDASKKPEDSNYTVDVLTRCVVSKDGL
AKKSIKTVPLKEPGEPLVVSIPISEIASLSSARLYMPKDLLPLEIRENTLKQVIEFLSRK
PAGLPLDPEGDMKIQSSSYKKTIRRIEALEHLFEKHEIAKSPLINQKLKVLHKKEELKAK
IKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSADELTLTEL
MFNGVLKDIKVEEMISLLSCFVWQEKLQDAGKPREELDLLFAQLQDTARRVATLQLESKV
QIDVENFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLIQAA
KSIGETEMEAKFEEAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgaaacgaaagtcggcggacgggctgtcagaggagtctttgccttcatgt
aaacagaagagagagaatggcgtggttaatggaaatgagttggtggcttgtttacatgat
gtgtcgtatcccgagggttacgtacaaccactcccttgctcggattcttctgttcagaat
gacatcaagcctgcgaaagaattcccgtttactcttgacccttttcagtctgaagctatc
aaatgtcttaagaaaggcgagtccgtcatggtttcagcacatacatcagctggaaaaaca
gtggtagctttatatgctattgcaatgtcgttgaaaaatcagcagcgtgttatatacact
tctccaattaaggcactcagtaatcagaaatatagggagttcaaggaagaattctcagat
gtgggattgatgacaggagatgtcactattgagcctaatgcttcttgcttggtaatgacc
acagaaatctggcgtagtatgcagtacaaaggatctgaaattactcgtgaggtggcctgg
gtaatttttgatgaagtacattatatgcgtgatcgagaaagaggtgtggtatgggaagaa
agcattgttatggcaccaaagaattctcgatttgtgttcctttctgcaactgtgcctaat
gcaaaagaatttgctgattgggtagcaaaggttcatcagcagccatgtcacattgtttat
acggattatcggccaacacctcttcagcattatatttttcctgctggtgcagatggttta
tatttagtggtggatgataagggaaaatttagagaggacagctttcaaaaagcagtcaat
gcattagttcctaagagtgagggagaaaagaaaagagagaatgggaagtggcagaaaggt
ttagtggtgggaaaacttggagaagaaagtgacatctttaagatggtcaaaatgatcatt
caacgtcagtatgatcctgtcattcttttcagctttagcaaaagagaatgtgaatttctt
gccatgcagatggcaaaaatggatctaaatgaggatgatgagaaagcaaatatagaaact
attttttggagtgccatggacatgctttcagatgatgacaagaaactacctcaggtttct
aatatgttaccccttttaaagcggggaataggcgtgcatcattctggcttgcttcccatt
ctgaaagaagttattgaaattctgtttcaagaaggattgatcaagtgtctgtttgctaca
gagaccttcagcattggtctgaacatgcctgcaaaaactgtggtgttcactaatgtccgt
aaatttgatggggacaaattcagatggttatctagcggagaatacatacaaatgagtggg
cgtgctggtcgtcgaggaattgatgaccgcggggtatgcatccttatggtggatgagaaa
cttgagcctgctactgctaaaatgatgcttaaaggcagtgctgacagtctgaacagtgcc
ttccatttaagctacaacatgctcttgaatcaaatgcgctctgaagatggagatcctgaa
aatttgctgcgcaattcattctatcagttccaagctgatcgtgccattcctgatcttgag
aaacaagtgaaagaccttgaagaggaaaagaactcgatgataattgaagaagaagaaaat
cttaaaaattattacgatcttattcaacagtatagaagtttgaagacagatgcacgcaat
attgttttttctccaaagtactgtttaccctttctgcagccaggtagaatcctatgtatg
cagtgcacagctgatgaaaactccccatctttctcttttgaagaccacctgacatggggg
gtaataatcagttttgaacaagtcaaaagcttttctgaagatgatgcaagtaaaaagcct
gaagattcaaactacacagttgatgttcttacaaggtgtgttgttagcaaagacggactt
gccaaaaaaagcatcaagactgttccattgaaagagcctggagagcctcttgtggtttct
attcccatttctgagattgctagtctgagtagtgctcgattatacatgccaaaggacctt
ttgcctttggaaatacgagagaacaccttaaagcaggttatagagtttctttctagaaag
cctgctggactgccactagatcctgaaggagacatgaagattcaaagtagctcatacaaa
aagacaatccgtcggattgaggctttagagcacctatttgaaaaacatgaaattgccaaa
tctcctcttatcaatcaaaaacttaaagttttacataagaaggaagaattaaaggccaag
attaagtcaatcaagaaaactatgcgttcttccactgctttggcctttaaagatgaactt
aaggccagaaaaagagttctccggaggcttgggtatgtaacaagtgatgatgtagtagag
ttgaaaggaaaagttgcttgtgaaattagtagtgccgacgagttgaccctgacagagctt
atgttcaacggcgtcttaaaggacataaaggtggaggagatgatatctctgctttcatgt
tttgtgtggcaagagaagcttcaagatgctgggaaacccagggaggaacttgacttgctt
tttgcacaattacaagatacagctcgaagagttgccacacttcagcttgaatccaaggta
caaattgatgtcgagaatttcgtaaactcatttcgtccagatattatggaggctgtatat
gcatgggcaaaaggatcgaaattctatgaaatcatggaaatcacaccagtttttgaggga
agcttgatcagggcaattaggagattagaagaagttcttcaacagcttatacaggctgca
aaatctattggtgaaacagaaatggaggctaaatttgaagaggccgtctctaaaatcaag
agagacatagtgttcgcagcatcgctatacttgtag
DBGET
integrated database retrieval system
