Mercurialis annua (annual mercury): 126660536
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Entry
126660536 CDS
T10153
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mean00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126660536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mean03041
]
126660536
Enzymes [BR:
mean01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126660536
Spliceosome [BR:
mean03041
]
Complex C
Other components
Step II factors
126660536
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
KH_DEAH11
Helicase_C
OB_NTP_bind
IBR
DEAD
AAA_22
HA2_C
AAA_19
IBR_1
WHD_HA2
Rcat_RNF216
ABC_tran
zf-C3HC4
zf-RING_2
zf-C3HC4_2
nSTAND_NTPase5
AAA_30
RRM_1
T2SSE
AAA_29
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126660536
NCBI-ProteinID:
XP_050210053
LinkDB
All DBs
Position
LG8:complement(4406057..4413051)
Genome browser
AA seq
1730 aa
AA seq
DB search
MIPDSTRHRTHHPPPSRHRQFRPPQPLHHRPLPHHRQQTRLFLVKLISTHHTQCHSNRTL
ESIVSQCTPKPFQINTRPLPSTGSLAATLLYRHQIDAVNAFIFLWEKRLLGDHLFTPIVD
FGINDETHDKIRVLFQLHCKSLLGGEFLEKLEWRVNELSFDIDRVSNLLKKPKGLRVFND
LGDEKDRLVGELDGIVKRIEEFKFGVRCVLDYLEKKDVEGEMELRVLLGFRNGKSHNWSK
LHCLLLRECRRVEDGLPIYGSRREILRQIHSQQVIVLIGETGSGKSTQLVQYLADSGVAA
SGSILCTQPRKIAALSLSKRVGEETSGCYDDYSVVCFPTYSSDQLLDSKAIYMTDHCLMR
HLMRDKTLSGVSCIIVDEAHERSLDTDLLLALIKELLIDRRDLRLVIMSATVDATKISEY
FFGCGTFRVMGRNFPVDIEYVPGAFEGSSVRLPGVSNTAPYVFDVVKKATEIHQVEKEGA
VLAFLTSQLEVEWACEKFHSPSAIVLPLHGRLSHEEQSRVFQNYPGKRKVIFATNLAETS
LTIPGVKFVIDSGMAKESKFEPSSGMNILRVSKISQSSANQRAGRAGRTEPGKCYRLYSE
VDYQSMALHQEPEICKVHLGIAVLRILALGIKNVLDFDFIDAPSEKAVDMAIKNLKQLGA
VTCKNNVFELTSVGHYLVKLGIEPRLGKIILDSCHYGLRKEGVVLAAVMSNASSIFCRVG
TDDDKLKSDCLKVQFCHQDGDLFTLLTVYREWEDISLEDRNKWCWNNSINAKTMRKCNQT
VQELENCLRTELNIIIPSYWVWKPYAVTGHDRSLKKIILSSLTDNVAMYSGYDRLGYEVA
LSGEYVQLHPSCSLQAYSGKPHWVVFAELLSASSQYLVCVTAIDFDSLSVCSPPSFDISK
MQSRKLQARVIKGFSSTALKRFCGKANHNLLSVLSRMQTQFMDKRIGIEISVDNNEVLLY
ASLQDMEKVYGLISDALEYEMKWLNNECLEKCLYNVGRAGASPPFALFGAGAEIRHLELE
NRCLSVDVFLSDGSSVNDKEILTFLENSVSGVCGVHRFAGSKLDADNVEKWGKVTFLTPE
AARKALELNGFHLSGSFLKLSPAGAGGSHKLSSFAALRAKITWPRRYSKGRAIVRCERNE
AQFVLQHCYDLRIGNCVLHCALSTKEMDCIVIEGLDRDTSESEILEYLQMVTGRRFLDVF
LIRGEAVNNAPSLSACEDAILKEIAPFMPNQAPLSNYCHVQVFSPNPMDTFMKARITFDG
TLHLEAAKALQHIQGKVLAGCFSWQKMQCERKFHSSISCPAPVFAFIERQLDSLLERFTL
RPGVRCSVETNANGSYRVTISANATKIVAELRRPLEQLMNGKTVDHGSLSPAVVQLLFSG
DCRFIMRSLQQETGTCIFFDRHSLNVRIYGPENKTALAEKKLIQSLLSLHDKKQMYIPLR
GGVMPHNLMKKAVEKFGPDLHGLKEMFPDTEFTLNTRRHGISLTGKEDLRLKVEDIVHDF
ARSLSISGSEKKPEFEATSCPICLCEVEECYQLEACAHKFCRPCLFEQLESAMRGRDGFP
IRCTYEGCGKHILLVDLKSLLPGDKIDDLFRASVEAFVASSGGKYRFCPSPDCPSVYQVS
NSGIFAGAFACGACYVETCTRCHLEYHPYISCERYKMFKDDPDMSLKDWCKGKEHVKSCP
VCGFVIEKIDGCNHIECKCGKHVCWACLEFFSSSEDCYGHLREIHQGIQF
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgatccctgattccacccgccaccgtacccaccaccctcccccctcccgccaccgtcaa
ttccgccctcctcagccgctccaccaccgccccctgcctcaccaccgtcagcaaacccgt
ttattcctggtaaaactcatctcaactcaccacacacagtgccacagtaaccgcacacta
gaatcaattgtttcacaatgtacacctaaaccattccaaatcaacaccagaccgctgccg
tccaccggttctctagcggcgacgcttttataccgccaccaaattgatgccgttaatgct
tttatttttctgtgggagaagcggttattaggtgatcatttgtttactccaattgttgat
tttggtattaatgatgaaacccatgataaaattagggttttgtttcaattgcattgtaaa
agccttttgggaggtgaatttttggagaaattagagtggagagtgaacgaattgtcgttt
gatattgatagagtttctaacttgcttaagaaacctaagggtttgagagtgtttaatgat
ctgggagatgagaaggacagattagtgggggaattggatgggattgttaagagaattgag
gagtttaaatttggggttaggtgtgtgttggattatttggaaaagaaggatgttgaggga
gagatggagctgcgggttttgttggggtttagaaatgggaagagtcataattggagtaag
ttgcattgcctgttgttgagagaatgtagaagggttgaagatggtttgccgatatacggc
tctaggagggagattttgcggcaaatacattcgcagcaggtaatagtcttgattggagag
acaggttctgggaagagtacacaattggtacagtatcttgctgactcaggggttgctgcc
agtggctctattttgtgtactcagcctcgtaaaattgctgctctttccttatcaaagagg
gttggtgaggaaactagtggatgttatgacgattattcagttgtctgttttccaacttat
tcgtctgaccagttgcttgattcgaaggcaatatacatgactgatcactgtctaatgcgt
catctcatgagagataagactttgtctggagtttcatgtattattgtggacgaagctcat
gaaagaagcttggatactgatctccttttggccttgattaaagaattgcttattgatagg
cgtgatctaaggcttgttataatgtctgcaacagttgatgcaaccaaaatatcggaatac
ttttttggctgcggaacctttcgtgtgatggggagaaattttcctgttgatatcgaatat
gttccaggtgcctttgaagggtcttctgttcgcttacctggtgttagtaatacagctcca
tatgtttttgacgttgtaaagaaggcaacagagattcatcaagtagagaaagaaggggct
gttcttgcctttttgacttcccagctggaggtagaatgggcttgtgaaaagtttcactct
ccctctgcaatcgtattgccattacatggaaggctttcccatgaagaacaatctcgtgtt
ttccagaattatccagggaagagaaaagttatttttgctacaaatttagctgaaacatct
ttgacaattcctggggtcaagtttgtgattgattccggaatggctaaggaaagcaaattt
gaaccttcttctggcatgaacatcctcagagtttcgaagattagccagagttctgctaat
caacgagctggtcgtgctggtcgaacagaacctggcaagtgctatcggctttactcagaa
gttgattatcagtctatggctctccatcaggaacctgaaatttgtaaagttcaccttggt
attgcagttttgaggatccttgctttgggtattaagaatgtgctggactttgattttata
gacgctcctagcgaaaaggcagtcgacatggccattaagaacctcaagcagttgggtgct
gtgacctgcaaaaataatgtttttgaattgacttctgttgggcactacttagtgaagttg
ggtattgaaccccgacttgggaagataattcttgatagctgccattatggtttgcgtaaa
gagggagttgttcttgctgctgttatgtctaatgcaagtagcatattttgcagagttggt
accgatgatgacaaactgaagtcagattgccttaaagtgcaattttgccatcaggatgga
gatcttttcacattgcttactgtttacagagaatgggaagatatctctctagaggataga
aataagtggtgttggaataatagcataaatgcaaaaactatgcgtaaatgcaaccagaca
gtgcaagagttggagaactgtttacgtactgaacttaatattattatcccgtcttactgg
gtttggaagccttatgctgtcacagggcatgacagaagtttaaagaagattatactttct
tctctaaccgataatgttgccatgtattctggatatgatcgtctcggttatgaagtggct
ttgagtggagaatacgtacaacttcatccttcatgttcattgcaagcgtatagtggaaag
ccacattgggtcgtctttgctgagctcttgtctgcatcaagtcaatatctggtctgcgtt
actgccatagactttgatagtttgtctgtttgtagtcctccttcatttgacatctcaaag
atgcagagtagaaaattacaggcgagggtgatcaaaggatttagcagcactgctttgaaa
aggttctgtgggaaggcaaatcataacttactttctgttctatctcgcatgcagacacag
ttcatggataagcggataggtattgaaattagtgtggataataatgaggttctattgtat
gcatctttacaagacatggagaaggtttatggccttattagtgatgcgttagaatatgaa
atgaaatggttgaataatgaatgcctggagaagtgcttatataatgtcggacgagctggg
gcttctcccccatttgcgctttttggagctggtgcagaaatcaggcatcttgaactagaa
aacagatgcttgagtgtagatgtgtttctttcagatggaagttctgtaaatgacaaggag
attctgacattcttagagaactcagtttcaggggtatgtggggttcatagatttgcaggc
agcaaactggatgctgacaatgtggagaagtggggcaaggtgacgtttcttacccctgaa
gctgctagaaaagccctggagttaaatggatttcatttatctggatcttttcttaagctg
tcccctgctggcgctggaggtagtcataaattatcatcatttgctgccttaagagccaaa
attacttggccgcggaggtatagtaaagggcgtgcaattgtcagatgtgaaaggaatgaa
gctcagtttgttcttcaacattgctatgatctgcggattggaaactgcgtacttcattgt
gcgcttagcactaaggaaatggattgcattgtcatcgaaggactggatagagatacttct
gaatctgaaattcttgaatatctgcaaatggttacaggcaggagatttttggatgttttt
ttgatacgaggagaggctgtaaataatgctccttctcttagtgcttgcgaggatgcaatt
ctcaaggaaattgctcccttcatgcctaaccaggctcccttgagcaattactgtcatgtt
caggtcttttctcctaatccaatggatacttttatgaaggctcggatcacctttgatgga
acactacatttagaggctgcaaaagctttgcaacatatccaaggaaaggtccttgctgga
tgtttttcatggcagaaaatgcaatgtgagcggaagttccacagctctatatcatgtcct
gctcctgtatttgcattcattgagaggcaactggactctttgctggaaaggttcacgctt
cggcctggtgtgcggtgcagtgtagaaacgaatgcaaatggttcttacagggtgacaata
tctgccaatgcaacaaagatagtagcagagttgaggaggccactggagcagctaatgaac
ggaaagacggttgatcatggtagcctcagcccagcagttgtgcagcttctcttttctgga
gattgcagatttattatgaggtcgctgcaacaggaaacgggaacttgcattttcttcgat
aggcacagcctcaatgttcggatctatggtcccgagaataaaactgctcttgctgagaaa
aagttgatacaatcccttctatcactgcatgataagaagcaaatgtatattcctcttcga
ggtggagttatgccgcacaatcttatgaagaaagccgtcgagaaattcggacccgattta
catgggctcaaagaaatgtttcctgacacggaatttacactcaatacaaggcgccatggc
atctctcttaccggcaaagaggatttaaggctgaaggtggaggatatagttcacgacttc
gctcgatctctaagcatcagtggatctgagaagaaacccgagtttgaagctactagctgc
ccaatttgcttgtgtgaggttgaggaatgttaccagcttgaggcttgcgcgcataaattc
tgtcggccgtgcttattcgagcagttagagtcggccatgagaggacgtgatggttttcct
atacgttgtacttacgaaggttgcgggaagcacattttgcttgtggatttgaagtccttg
ttaccaggtgacaagatagatgacctttttagagcttctgttgaggcatttgtagcatca
agcggtgggaagtacagattctgcccctctcccgactgtccttctgtttaccaggtgtca
aatagtggaatatttgcaggtgcatttgcatgtggggcatgctatgtcgagacatgtacg
aggtgtcacttggagtaccacccgtacatttcgtgcgaacgatacaaaatgttcaaggat
gatccggatatgtcgttgaaggactggtgtaagggaaaagaacatgttaagagctgtccg
gtatgcgggttcgtaatcgagaagatcgatggctgcaaccacatcgagtgcaaatgcggc
aaacatgtctgttgggcctgcttggaattctttagcagtagcgaagactgttatgggcac
ttgagagagatacatcagggaatacagttctaa
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integrated database retrieval system
