Mercurialis annua (annual mercury): 126670007
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Entry
126670007 CDS
T10153
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mean00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126670007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mean03019
]
126670007
Enzymes [BR:
mean01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
126670007
Messenger RNA biogenesis [BR:
mean03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126670007
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
Motif
Other DBs
NCBI-GeneID:
126670007
NCBI-ProteinID:
XP_050219614
LinkDB
All DBs
Position
LG2:7092267..7095397
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AA seq
699 aa
AA seq
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MAKQWPFRLLSRALSRAYSSPTSPTAAAASTTADITPSFPLKHVTKANFNSSLADLKDHV
RAADFIAIDLEMTGITSAPWRELFEYDRFDVRYLKMKDSAEKFAVVQFGVCPFHWDSTCQ
SFIAHPYNFFIFREDNEFLCQATSLDFLAKYQFDFNICIREGVSYLSRRQEEEELRRLNS
RYEDYTNFNEVRDVPLVGITDVLFSERMKNRLSEWRDGLMKNRNEAGESQFETIFYKMRP
ALCLSGFTSHQLKLIQLVTKKHFKDLAYVGGSHSSSVQDLVVYVDSKNDKDSLMEEVKAE
CRKRAEMKINNTIGFRHVIDLLSSAQKLIVGHNCFLDIAHIHSKFLGPLPPTAEEFVSSV
NKYFPHIVDTKVLLNGDNVLLQRMKKSRTSLSSAFSLLCPKIAAGSQKGSDLDFRPSVNV
EVQVDDTRSSSWRSGVKHEAGYDAFMTGCVFAQICSHLGVDFKLHSSSENLAHNEKLQKH
INHLYLSWINWDIIDLRTGSRVVESSGSNGLRKRHTNVLFENTVLIWRFPSRLKAGAIKD
CICKVFGPNSVTSIFHVDETAVFVQFNKPELVSEFLVLKESLDRSNDPISVLHPLSKLLE
GGNTCAAGYETYKEICSSPISKVRFADQAEAIGIKWKTKLVEAQAEETTTAKSTSAKKSE
VGNQHARDNGSSTTDRLLSDEVIECFYAAEGKQRASTQL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacaatggccattcagattattatcacgtgctctctcacgtgcatattcctcc
cccacctcccccaccgccgccgcggcgtccaccaccgcagacattacgccgtcgtttcct
cttaaacatgtaactaaagcaaacttcaactcctcactcgcagacctcaaagaccatgtc
agagccgccgattttatcgcgattgacctagaaatgaccggaataacctccgctccgtgg
cgtgaattgttcgaatacgatagatttgacgtccgttaccttaaaatgaaagattccgct
gaaaaattcgccgtcgttcagttcggcgtttgtccttttcattgggactcaacttgccaa
tcgtttatagctcatccgtataatttcttcatattccgtgaagataatgagtttttgtgc
caggccacgtcactggattttttagctaaatatcaatttgatttcaatatctgtatacgg
gaaggagtgtcttatttatccagacggcaggaagaggaagaattaagacgattgaattcg
agatatgaggattatactaatttcaatgaagttagagatgtgccattggtcggtataacc
gatgttctttttagtgagagaatgaagaacagattgagtgaatggcgtgacggtttgatg
aagaatagaaatgaggcgggggagtctcagtttgaaaccattttctataagatgcgtccg
gctctttgtttgagtggttttacttcgcatcagcttaagttgattcagttggtaactaag
aagcattttaaagatcttgcttatgtgggtggtagtcatagttcttctgtccaagattta
gtcgtatatgtagactccaaaaatgacaaagattcacttatggaagaggtgaaggctgag
tgtcgtaaaagagctgagatgaaaatcaataatacaattggatttcgtcatgttattgat
cttctttcttctgcacagaaattgattgttggtcacaattgcttcctggatattgcgcac
atacacagcaaattcctaggtcctctccctccaactgctgaagaatttgtttcctcagtt
aacaagtacttcccacacattgttgatactaaagttctcttgaatggcgataatgtactc
cttcaaagaatgaagaaatcaagaacatcactctcatcagccttttctctactatgtcca
aaaattgctgcaggttcacagaagggcagtgatctggattttcgtccatctgttaatgta
gaggttcaagtggacgatacaagatcctccagttggagatctggagtcaaacatgaagct
ggatatgatgcttttatgacagggtgtgtcttcgctcagatatgcagccacctcggcgtc
gattttaagctccattcatcttccgagaatctggcccataatgaaaagctccagaagcac
atcaaccatctgtatctaagttggattaattgggacattattgatctaagaaccggtagt
agagtcgtagagtcctcaggatctaacggcctcagaaagcgacatacaaacgtgttgttt
gagaatactgttttaatctggcgatttccatctagactcaaggcaggagcgataaaagat
tgcatatgtaaagtcttcggcccaaactctgttacatccatctttcatgttgatgaaact
gcagtatttgttcagttcaataagccagagttggtctcggaatttttagttctgaaagaa
tccttggacagaagtaatgatcctatctctgttttgcatcctctatcaaaattactggaa
ggtggaaatacgtgtgcggctggttatgaaacttataaagagatctgcagttcaccgatc
tctaaagtccgttttgcagatcaagcggaggcgattggtattaaatggaagactaagttg
gtagaggctcaggcggaggagacaacaactgctaaatcaacttctgcgaaaaagagtgag
gtaggcaatcaacatgcaagagacaatggatcgagtacaacggatcgattattgtctgat
gaggttattgaatgtttttatgctgctgaaggtaagcagagggcaagtactcaattgtga
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