Mercurialis annua (annual mercury): 126673718
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Entry
126673718 CDS
T10153
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mean00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126673718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mean03021
]
126673718
03019 Messenger RNA biogenesis [BR:
mean03019
]
126673718
Transcription machinery [BR:
mean03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126673718
Messenger RNA biogenesis [BR:
mean03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126673718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
126673718
NCBI-ProteinID:
XP_050223914
LinkDB
All DBs
Position
LG3:57456909..57466646
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AA seq
707 aa
AA seq
DB search
MDDSDGGLSFDFEGGLDTVPTNPAAAIPSIPSDNSAANSSLLVAAANNSTFPAAASTDAA
SAAAASANNQAGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECRE
QDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSYNYGS
SNKFFQHKGAGFQQQADNKSQFSHGPNNVAQGLATKPSGTESANAHMPQQQQQQQLGQGQ
LSQQLVAQNPTQNPPNGQPIQPNKTAIPLPQGISRYFIVKSCNRENLELSVQQGLWATQR
SNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIGANVGGGNWKYAHGTAHYGRNF
SVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSVGAMLASLLYDEPDSELMAI
SLAAEAKREEEKAKGVNPENGGNNPDIVPFEDNEEEEEEEEEESDEEDDSFDQALGPAGQ
GRGRGRGMMWPHMPMPRGARPMPGMRGFPPMMMGADGFPYGHATPDGFGMPDLFGRGFSP
YGPRFSGDFTVPPTGMMFPGRPPQPGAVFPPGGFGMMMGPGRGPFMGGMGPNATNQLRGN
RPGGMTFPPFPAPSTQNSSRIIKRDPRTANNDRYSTGSDQGRITAGGPDEYQQDGLKASH
EDQHGAGNNFRNDESESEDEAPRRSRHGEGKKKRRGSEGDGTPGSDN
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggacgattccgacggtggcctcagcttcgacttcgaaggaggcctcgacactgtccca
actaatcccgccgccgccatcccttcaattccctccgacaattccgccgccaactcctcc
ctcctcgtcgccgccgccaacaattcaaccttccctgccgcggcttcaaccgacgcagct
tccgcagccgccgcctctgcaaacaatcaggcaggacggcggagcttccggcagacagta
tgccggcattggcttcgaagtctatgcatgaagggcgacgcctgtggtttcttacatcaa
tacgacaagtcgcggatgccggtttgccggttttttaggctttatggagagtgcagggag
caagattgtgtgtataagcacaccaatgaggatataaaggagtgcaatatgtacaagtta
gggttttgcccaaatggtcctgattgtcggtataggcatgctaagttacctggacctcca
cctcctgtggaagaagtccttcagaagattcagcaattaaattcttataattatggatcc
tcaaataaatttttccaacataagggtgctggttttcagcaacaggcggataataaatct
caattttcacacggtccaaacaatgtggctcaaggattggcaacaaaaccctcgggaaca
gaatcagccaatgcacatatgcctcagcagcagcagcaacaacagttagggcaaggacaa
ctgtctcaacagctggtcgctcagaatccaacacaaaatcctccaaatggacagcccatt
cagccgaacaaaactgcaattcctttgccccaaggaatatctaggtattttatcgttaaa
agttgcaatcgtgaaaatttggaattatctgtccaacaaggactttgggcgactcaaagg
agcaatgaagctaaattaaatgaagcttttgactctgctgaaaatgtgattttgattttc
tcagtcaatcggactcggcatttccagggatgtgcaaagatgacatcaaaaattggtgcc
aatgttggtggaggaaactggaaatatgcacatggaactgcacattatggacggaacttc
tcagtaaaatggttgaagctatgtgaattatcattccacaaaactcgccacctgaggaac
ccatacaacgagaacttgccggtgaagattagtagagattgtcaagagctagagccctca
gttggtgcgatgttagcttccttactttatgacgagccagatagtgaactcatggcaatt
tcactagcagcggaagcaaaaagggaagaggaaaaagcaaagggtgttaatccagaaaat
ggaggtaataacccggacatcgttccatttgaagacaatgaagaagaagaagaagaagaa
gaggaagagagtgatgaggaggatgacagctttgaccaggctctcggaccagcaggtcaa
gggcgaggccggggcaggggaatgatgtggcctcacatgccaatgcctcgtggtgcaaga
ccaatgcctgggatgcgaggtttcccccccatgatgatgggtgctgatggctttccatat
ggacatgctactcctgatggctttggaatgcctgatctttttggtcggggattttccccg
tatggtccaaggttttctggtgattttacagttccaccgactggtatgatgtttcctggg
agacctccccagcccggggctgtgtttccacctggtggatttggcatgatgatgggacca
gggcgggggccttttatgggtgggatgggccccaatgctacaaatcaacttcgtggcaat
cggccaggtggtatgacatttccgccatttcctgccccatccactcaaaacagcagcaga
attattaagagagatccgaggacagcaaataatgaccgatacagtaccggatcagatcaa
ggcaggattacagctggaggaccagacgagtaccagcaagatggattaaaggcttcccat
gaagatcaacatggtgcaggaaataactttagaaatgatgagagtgaaagtgaggatgag
gcaccaaggagatcgaggcacggggaaggtaagaagaagcgacgaggctcagaaggtgac
ggaactccaggctccgacaactaa
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