Mercurialis annua (annual mercury): 126679917
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Entry
126679917 CDS
T10153
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03013
Nucleocytoplasmic transport
mean03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mean00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126679917
03015 mRNA surveillance pathway
126679917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mean03019
]
126679917
Enzymes [BR:
mean01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126679917
5.6.2.5 RNA 5'-3' helicase
126679917
Messenger RNA biogenesis [BR:
mean03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126679917
mRNA cycle factors
Common to processing body (P body) and stress granule
126679917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
126679917
NCBI-ProteinID:
XP_050230895
LinkDB
All DBs
Position
LG5:complement(54482682..54498398)
Genome browser
AA seq
1273 aa
AA seq
DB search
MDAEQSALYETASQPDTGTDAYTFLEFNTQGESDFDYPEFRSPITSAWPTPSDSLAAAAA
AAATSSSALDPIASAAPASSSSSDHHHSAADSPSAAAAAGSSPGKGLRSGVEGIVSGMGG
LNFEETVGDEEVGGGGGDYTEHACRYCGVTNPACVVRCNVPSCRKWFCNSRGNTSGSHIV
NHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVN
ALKDMNWDLSQWCPLIDDRCFLQWLVKVPTEQEQLRARQISAQQINKVEELWKTNPDASL
EDLEKPGIDDEPHPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGL
NKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRAS
QGVPVDINHGLSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQNVRNA
LPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL
VCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHK
LQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLID
ESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPI
RLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEE
ISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQ
LYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNP
KVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPN
DSASSSPSSDRRSSRGRGSFIPPGPPNGTHKPNAHPTGFPMSRVPIPPFHGGPLSQPYAI
PTRGAVHGPVGAVPHVPPPGSRGFGAGRGNTGAPIGSHLPHQQNTQQTIGNMGSTFNFPA
FENPNSQPSAGGPLSQPGYVNNMPVQGPSQSFRDGFSMGGMSQDFLGDDFKSQGSHVPYN
VADFSTQVSQSGYAVDYVTQGGQGGFPGNFINQNSQAGFSRFGSGNDFMSQDYMTHGSQG
LFTQINFSDPSQDDVSQSHFGIANANPLQSQGLMNSLYSQPFAHYNTQPLNLQSTQQPPQ
GQGSQNQKMHYNG
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagagcagagcgctctctacgaaacggcgtcgcagccggacaccggaacagac
gcgtacacattcctcgaattcaacacacaaggcgaatccgacttcgattatcccgaattc
cgttctccgataacatcagcgtggccgacaccttcagattctctcgcggcggccgccgcc
gccgcagcaacctcttcttctgcgttggatcccatagcatccgccgcaccagcatcgtcg
tcgtcttctgatcaccaccactccgctgctgattctccctcagcggcggcggcagcaggc
tcttcccctgggaaggggttgaggagtggcgtggaagggatagtgagcggaatgggaggg
ttgaattttgaggagacggtgggagatgaggaggtaggaggaggaggaggggattacacg
gagcatgcttgtaggtattgtggggttacgaatcctgcttgtgttgttaggtgtaatgtt
ccttcttgtaggaagtggttttgtaattctagaggcaatacctccggttcccacattgtt
aatcacctggtccgtgcaaaacacaaagaagtctgtctccataaagacagtcctctagga
gaaactatacttgaatgttataattgtggatgcagaaatgtgttccttcttggatttata
tcagccaagacagaaagtgtcgtcgttctcctttgtagggaaccttgcttgaacgtgaac
gcattgaaggacatgaactgggatctgagccaatggtgccccctcattgacgataggtgt
tttctacagtggcttgttaaggtacctactgaacaggagcagctgagggcacgtcaaatt
agtgctcagcaaataaataaagtagaagaactttggaaaacaaatcctgatgcctcccta
gaagatctcgagaaacctggcattgatgatgagccccatcctgtagcattgaagtatgaa
gacgcataccagtatcaaaatgtatttgccccgctgattaagcttgaggctgattatgac
aagatgatgaaagaatcacaaagcaaggataatgttactattcgatgggacattggcctt
aacaagaagcggattgcatattttgtctttccgaaggaggacaatgaattgcgtcttgta
cctggtgatgagttgcggctgcgttattctggtgatgctgcccatccagcatggcagtca
gttgggcatgtgatcaaattaactgcacaagaggaagtagcacttgagcttcgtgctagt
cagggagttcccgtagatataaaccatggcctcagtgttgattttgtgtggaaaagtaca
agctttgatcggatgcaaggggcaatgaaaacttttgctgttgatgaaacaagtgtcagt
ggttacatataccaccatctgctgggtcatgaggttgaaaatcaaaatgttcgcaatgct
cttccacggcgttttggtgcccctggtcttccagagctgaatgcatctcaggtttttgct
gtaaagagtgttcttcaaagacctataagcttgattcaaggaccgcctggcactggaaaa
actgttacctctgctgccattgtttatcacatggctaagcagggtcagggacaggttttg
gtatgtgcacctagtaatgtggctgtagaccaactagctgagaagataagtgccactggc
ttaaaggttgttcgactatgtgcaaagtcgagggaagctgtaagttctcctgttgagcat
ctaacccttcactatcaggttagacatcttgacacttctgaaaagagcgaacttcacaag
ttgcaacaattgaaagatgaacaaggggagctgtccagcagtgatgagaaaaagtacaaa
gcactgaagcgagcaacagagagggagatttcgcaaagtgctgatgttatttgttgtact
tgtgttggtgctggagatcctcgtcttgcaaattttaggttccgccaggtacttattgat
gagtctactcaggcgacagaacctgagtgtcttattcccttagtgcttggggcaaagcag
gttgtccttgttggagaccattgccagcttggtccagtcattatgtgcaagaaagctgct
cgtgctgggctcgcgcagtctctttttgaacgccttgttttacttggcgtcaaaccaatt
agattgcaggttcaatatcgcatgcatccgtgcctttcagaatttccatctaacagcttt
tatgaaggcacactgcaaaatggagtgactgtcaatgagaggcagtcatcgggaatcgat
tttccttggcctgtgcctaatcgtcccatgttcttttatgttcagatgggacaagaggaa
ataagtgccagtggaacatcttatctaaatcgtactgaggcagctaatgttgaaaaaatt
gtgactactttcttgagaagtggtgtggtgcctagtcagattggagtgattaccccatac
gaggggcagagagcatatattgtgaactatatgtcaagaaatggtgctcttagacagcaa
ctgtataaagaaattgaggttgcaagcgttgattccttccaaggaagggaaaaagattac
attattttgtcctgtgttaggagtaatgaacatcagggtattgggtttcttaatgatcca
cggaggctcaatgttgctcttacacgtgctagatatggcattgttattttgggaaaccct
aaagttctgagcaaacaacctctgtggaatagccttctgacacactacaaggaacatgaa
tgcttggttgaaggtcctttaaataacttgaagcagagtatggttcaatttcagaagccc
aagaagatctataatgataggagactcttctttggtggtggccctggaattgttcctaat
gacagtgcttcatccagcccaagctctgatagaagaagctctcgtggcagaggttcattc
ataccacctgggccgcccaacggtactcataagcctaatgctcatcctactgggttccca
atgtctcgagttcccattcctccatttcatggtggtccactatcccaaccatatgccatt
cctactcgcggagctgtgcacgggcctgttggcgctgttcctcatgttcctccaccagga
agtcggggttttggtgcggggcgtgggaatactggtgctcccattggcagtcatcttcca
caccagcaaaacacgcagcaaactattggaaatatgggatccacatttaactttcctgct
tttgagaatccaaatagccagccatctgcgggcggtccactgtctcagcctggatatgtc
aataatatgccagtccaaggtccaagtcaatcattccgtgatggattttctatgggaggc
atgtctcaggatttcctgggtgatgactttaaaagccagggctcacacgttccttataat
gttgcagacttctccactcaggtttcacaaagtggatacgcagttgactatgttacacag
ggaggacagggtgggttcccaggcaacttcattaatcagaattctcaagctggattttct
cgttttggttctggaaatgatttcatgtcccaggactacatgactcatggatcacagggc
ctgttcactcagatcaacttcagtgatccttcacaagatgatgtgtcacaatctcacttt
ggcatagccaatgcaaaccctctccaatcccagggcttgatgaactctctctactctcag
ccctttgcgcactataacacccagccactaaacttgcagtctacgcagcagcctccgcaa
ggtcaaggttcccaaaaccagaaaatgcactacaatggttga
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integrated database retrieval system
