Mercurialis annua (annual mercury): 126682195
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Entry
126682195 CDS
T10153
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03008
Ribosome biogenesis in eukaryotes
mean03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mean00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126682195
09123 Folding, sorting and degradation
03018 RNA degradation
126682195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mean03021
]
126682195
03019 Messenger RNA biogenesis [BR:
mean03019
]
126682195
03009 Ribosome biogenesis [BR:
mean03009
]
126682195
03016 Transfer RNA biogenesis [BR:
mean03016
]
126682195
Transcription machinery [BR:
mean03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126682195
Messenger RNA biogenesis [BR:
mean03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
126682195
Ribosome biogenesis [BR:
mean03009
]
Eukaryotic type
Pre-60S particles
RNases
126682195
Transfer RNA biogenesis [BR:
mean03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
126682195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
126682195
NCBI-ProteinID:
XP_050233751
LinkDB
All DBs
Position
LG1-X:72230812..72240943
Genome browser
AA seq
1124 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVVDAIEEEPVVIDDVKIPVDSSKPNPNNIEYDNLYLDMNGIIH
PCFHPEDRPSPTSFDEIFQCMFDYMDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDREEAAAEEERLRQEFEMEGRKLPPKESSQVFDSNIITPGTEFMAVLSIALQYYVHL
RLNYDPGWKKVKVILSDANVPGEGEHKVMSYIRLQRNLPGFDPNTRHCIYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAADCEGKVKRKAGEFDEKGEAIVAKKP
YQFVNIWTLREYLEMEFRIPNPPFKIDLECIVDDFIFICFFVGNDFLPHMPTLEIREGAI
NLLVAVYKKEFKAMGGYLTDGSKPNLRNVEHFIQAVGSYEDQIFQKRTRLHQRQSDRIKR
EKAQSRSKRGDDAEPQVQPESLVPVTRFHGSRLASAPTPSPFQQETVDLNGRSTNSLASN
GKESFVQAGKLARSSSSASVGAAIVEAENSLEIDFHENKEELKAKLKEILREKSDAFNSE
NPECDKIKLGEPGWRERYYEEKFSANSSEELEVIRKDVVLRYTEGLCWVMRYYYEGVCSW
QWFYPYHYAPFASDLKDLAQMNINFELGTPFKPFNQLMGVFPGASSHALPMKYRTLMTDP
NSPIIDFYPTDFEVDMNGKRYAWQGIAKLPFIDEDRLLAEVKKVEHTLTEEESRRNSAMF
EMLFVLSSHSLAESIYLLDNYCKQLTDGERTEVKERINPELRAKCSDGMNGYISPCSGDT
HPPIFRSPVGGMEDILDNGVICAIYRLPDPHKHITRPPTGVIFPEKMVNAGDLKPEPVLW
HEDTGRRPWENDRRNPPRNISGRQLGEASHRLVANSLQLKADRNGYANHSHSPSRHDAAS
PYAPQQASYSNGSHDPGRHRTRQSRMDYSHAGQPRPFNPTYYDQAHGQSYAAPVANPHYS
GPRPPFERENRSNGQHSRQVYHRPNFHQNGPRHLHGSVAETSGAYGYQSEYDGYQSHQPL
RDSGHQQWGSRFPPPADQNLPRGYNHNQQRGNRYSVIDARGNRGPPLPDTSGIDRRPPQQ
HPHGGVNRRPQYQPRGGLHSRSQQASPGGSSRFYQEPPPPGYSR
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcgttttatcggtggttagccgagaagtatccgcttgtagtggttgat
gcaattgaagaagaaccagtagttatcgatgatgttaaaattccagtggattcgagtaaa
ccgaaccctaacaacatcgaatacgataatttgtatctcgatatgaacgggattattcac
ccttgctttcaccccgaagacagaccttcgccgacttctttcgatgagatattccagtgt
atgtttgattatatggatagactttttgtgatggttagacctagaaagctgttgtatatg
gcaatcgatggtgttgctcctcgagctaaaatgaaccaacaaaggtctaggcgtttcaga
gcagccaaagatagagaagaagctgcagctgaagaagaaaggctcagacaggaatttgag
atggagggcaggaagctccctcctaaggaatcatcacaagtgtttgattccaatattatt
acacctggaactgaatttatggccgttctgtcaattgcactgcagtattatgttcacctt
agattaaactatgaccctggatggaaaaaagttaaggttatcctttctgatgcaaatgtt
cctggtgaaggggaacataaggttatgtcttacattcgacttcaaagaaatcttcccggt
tttgatccaaatacacgccattgcatatatggtttggatgcggatctgattatgttggca
ttggctacacatgaagttcatttttcaattcttagagaggttgttttcacacctggtcaa
caagacaaatgcttcttatgtggtcagatgggccatttagcggcagattgtgaaggaaag
gtcaagagaaaggctggagaatttgatgagaaaggtgaggctattgtagcaaaaaaaccg
tatcagtttgttaatatttggactcttagagagtatctggaaatggaattcagaatccca
aatcctccattcaagatcgatcttgaatgcattgtggatgattttattttcatatgtttc
ttcgttggcaatgattttttgccacatatgccaactttggagattcgtgagggtgcaatc
aacttgcttgtggcagtatataagaaggaatttaaggcaatgggtggatatttgactgat
ggaagcaagcctaatttgaggaatgtggagcattttattcaagcagtggggtcctatgaa
gatcaaatattccagaaaaggacgcgcttgcaccagcggcagtcagatagaatcaagcga
gaaaaggctcagtcaagatcaaaaagaggagatgatgcagagccacaagtacaaccagag
tctttggttccagttactcgatttcatggttctcgtcttgcctccgctcctacaccatca
ccatttcagcaggagactgttgacctcaatggtagaagtacaaatagtttggcatccaat
ggtaaagaatcttttgttcaggccggtaaacttgctcgttcatcttcatcagctagtgtt
ggtgctgccattgttgaagcagagaatagtttggaaatagatttccatgaaaacaaagaa
gaactgaaagctaagcttaaggagatacttcgtgagaaatctgatgcttttaattctgaa
aatccagaatgtgacaagattaaattgggagagccaggatggagggaaaggtattatgaa
gagaagttttctgcaaattcttctgaggaacttgaagtcatacgaaaggatgttgtttta
cgatatactgaagggctatgttgggtaatgcgctattactatgaaggagtttgttcttgg
cagtggttttatccgtatcattatgcaccctttgcttctgatctcaaagatctggctcag
atgaacattaattttgaactgggcactccatttaaaccattcaatcaacttatgggagtt
tttcctggtgcaagttcccatgctcttcctatgaaatatagaactttgatgactgatcca
aattcaccaatcattgatttttacccgactgattttgaagtggacatgaatggaaagcgt
tatgcgtggcagggtattgcaaagttgcccttcattgatgaagatcgcctccttgcagag
gtcaaaaaggttgaacatacgctaacggaggaggaatcaagaagaaacagtgcaatgttc
gaaatgctttttgttttatcatctcactctcttgctgagagtatatatttacttgataac
tactgtaagcagttgacagacggagaacgaaccgaagtaaaggaacgtattaatcctgag
ttaagggctaaatgcagtgatggaatgaatggctatatatctccatgttctggagatact
caccctcccatattcaggtctccagttggtggcatggaagatattttggacaatggagtc
atatgtgctatatacagacttcctgacccacataaacacattactcggcctcctactggt
gttatattccctgagaagatggtaaatgcaggagatctgaagccggaacctgttttgtgg
catgaagacactgggcggagaccttgggaaaatgataggagaaacccccctagaaacatc
tctggtcgtcagcttggtgaggcatcacatcggcttgtcgccaatagtttacagttgaag
gcagatcgtaatgggtacgctaatcattcacattctccatcacggcatgatgctgcaagt
ccttatgccccacaacaagcttcttattcaaatgggtcgcatgatccgggacgacataga
acgagacaatctagaatggattattctcatgcaggtcaacctagaccgtttaatcctact
tattatgaccaagctcatggtcaatcctatgctgcacctgttgctaacccccattatagt
gggcctcggcctccatttgaaagagagaaccgatcgaatggacaacattcaagacaagtg
taccaccgaccaaattttcatcaaaatggaccgcgccatctacatggttcagtagcagag
acctctggggcctatggttatcaaagtgagtatgatggctaccagagccatcaaccactt
agagattccggtcatcaacaatgggggagtagattccctccgcctgctgatcagaacctt
cctagagggtataatcacaatcaacaaagaggtaacagatattccgtgatagacgcaagg
gggaatagggggccgccactaccggatacgagtgggatagataggaggcctccccagcag
catccacatggtggggtaaataggaggcctcagtatcaaccgcgtggtggactacatagt
cgatcgcagcaggcatcacccggtggctcaagtaggttttaccaagaaccgccgccgcct
gggtatagccgctga
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integrated database retrieval system
