Mercurialis annua (annual mercury): 126686680
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Entry
126686680 CDS
T10153
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X3
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03008
Ribosome biogenesis in eukaryotes
mean03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mean00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126686680
09123 Folding, sorting and degradation
03018 RNA degradation
126686680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mean03021
]
126686680
03019 Messenger RNA biogenesis [BR:
mean03019
]
126686680
03009 Ribosome biogenesis [BR:
mean03009
]
126686680
03016 Transfer RNA biogenesis [BR:
mean03016
]
126686680
Transcription machinery [BR:
mean03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126686680
Messenger RNA biogenesis [BR:
mean03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
126686680
Ribosome biogenesis [BR:
mean03009
]
Eukaryotic type
Pre-60S particles
RNases
126686680
Transfer RNA biogenesis [BR:
mean03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
126686680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
126686680
NCBI-ProteinID:
XP_050236785
LinkDB
All DBs
Position
LG6:4715396..4728158
Genome browser
AA seq
1067 aa
AA seq
DB search
MGVPAVYRWLGKKYPLVVVDVIEEEAVVIDELKIPVDTSKPNPNNIEYDNLYLHMDGIIH
PCFHPEDRPSPTSYDEVFRCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDRAEAAAVEERLRQEFEMEGRKLPPKEFSQVLDSNIITPGTEFMAVLSIALQYYVHL
RLNYDPGWKKVKVILSDANVPGEGEHKVMSYIRLQRNLPDFDPNARHCLYGLDAHLIMMA
LATHEVHFSILREAVLTPAQQDKCLKCNQIGHLAVDCEGKNKRKAEELDEKGEAIVAKKS
YQFLNIWTLREYLEMEFRIPNPPLKIDLECIVDDFIFMCFFSGNAFLPPMPNLEIREGAI
DLLVAVYKREFKAMGGYLTDASKPNLRNVECFIQAVGSYEDKIFQKRARLDQRQLDRIKI
AQLRLERGDDAEPQVQLESSVLVTQFNGSRLASAPTPSPFQQSIETADLNCRSCNCLASK
SNGKGSFVPASKVARSSSSASVGAAIVEAENGLEINFHENKEDLKAKLKEILREKSDSFN
SENPECDKIKLGEPGWKKRYYEEKFSVKSPAELEDIKKDVVLRYTEGLCWLMRYYYEGVC
SWQWFYPYHYPPFASDLKDLGKMNIKFELGTPFKPFSQLLGVLPGASSYALPMNYRILMT
DPNSPIIDFYPTDFEVDMNGKCYAWQGIAKLPFIDENRLLAEVKKVEHTLTEEESRRNSA
MFEMLFVLSSHSLAGSIYLLDNHCKQLTDGERTEVKERINPELSDGMNGYISPCSGDTHP
AIFRSPVGDMEDNSDNRVICAVYRLPDPHRHITRPPTGVIFLDKLPEGIMASEKLTALEF
TWEEHMYLQKDQPISSSTAGVAEVSWKTKEKSKKIWIEKQRISAPRNKAKEDAFREANKK
LFQEAVKKREKLREEYYSNPANPRLKPCEEPEEWISSERDMTEEENERYARQVIESDGFD
VDKFPGTCAFGRIEPLPTENEVVRNEFNVYAEKAIEHYNDNNDTNYEFLELEKVNVLAVG
LTTTIYTTLRAKDKETGAVRTFQASAYSELIRRRHGVFEVTLCRLKL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcggtttatcggtggttgggcaagaagtatccactagtagtggtcgat
gtaattgaagaagaagcagtagttatcgatgaacttaaaattccggtggatacgagtaaa
cctaaccctaacaatatcgaatacgataatttgtatctccacatggacgggattattcac
ccctgctttcaccccgaagacagaccttcaccgacttcttacgacgaggtattccggtgc
atgtttgattacattgatagactttttgtgatggtcagacctagaaagctgttgtacatg
gcaatcgatggtgttgctcctcgagctaaaatgaaccaacaaaggtctaggcgtttcaga
gcagccaaagatagagcagaagcggcagctgtagaagaaaggctcagacaagaatttgag
atggagggcagaaagctccctcctaaggaattttcacaagttcttgattccaatattatt
acacctggaacagaatttatggcggttctgtcaattgcattgcagtattatgttcacctt
agattaaactatgatcctggatggaaaaaagtcaaggttattctctctgatgcaaatgtt
cccggtgaaggggaacacaaggttatgtcttatattcgtcttcagagaaatcttcccgat
tttgatccaaatgcacgccattgcctatatggtttggatgcgcatctgattatgatggca
ttggctacccatgaagttcatttttcaattcttagagaggctgttctcactcctgctcaa
caagacaaatgccttaaatgtaatcagattggtcatttagcggtagattgtgaaggaaag
aacaagagaaaggctgaagaattagatgagaaaggtgaagctattgtagcaaaaaaatct
tatcagtttctcaacatttggactctaagagagtatctggaaatggaattcagaatccca
aatcctccacttaagattgatcttgaatgcattgtggatgatttcattttcatgtgtttc
ttctctggcaatgcttttttgccacctatgccaaatttggagattcgtgagggtgcaatc
gacttgcttgtggcagtatataagagggaatttaaggcaatgggtggatatctgactgat
gcaagcaagcctaatttgaggaatgtggagtgttttattcaagcagtggggtcctacgaa
gataaaatattccagaaaagggcgcgcttggaccagcggcagttagatagaatcaaaata
gcacagttaagattagaaagaggagatgatgcggagccacaagttcaactggagtcttcg
gttctagttactcaatttaatggttctcgtcttgcctcagctcctacaccatcaccattt
cagcagagtatagagactgcagacctaaattgtagaagttgcaattgtttggcatccaaa
tccaatggtaaaggatcttttgttccggccagtaaagttgctcgttcatcttcatcagct
agtgttggtgctgccattgttgaagcagagaatggtttggaaataaatttccatgaaaac
aaagaagatttgaaagctaagcttaaggagatacttcgtgagaaatctgattctttcaat
tctgaaaatccagaatgtgacaagattaaattgggagagccggggtggaagaaaaggtat
tatgaagagaagttttctgtaaaatctcctgctgaacttgaagacataaaaaaggatgtt
gtcttacgatacactgaagggctatgttggttaatgcgctattactatgaaggagtttgt
tcttggcagtggttttatccctatcattatccaccctttgcttctgatctcaaagatctg
ggtaagatgaacattaaatttgaactgggcactccatttaaaccattcagtcagcttctg
ggagttcttcctggtgcaagttcctatgctcttcctatgaattatagaatattgatgact
gatccaaattcaccaatcattgatttttaccctactgattttgaagtggacatgaatgga
aagtgttatgcgtggcagggtattgcaaagttgcccttcattgatgaaaatcgccttctt
gcggaggtcaaaaaggttgaacatacgctaacggaggaagaatcaagaagaaacagtgca
atgtttgaaatgctttttgttttatcatctcactctcttgctgggagtatatatttactt
gataatcactgtaagcagttgacagacggagaacgaaccgaagtaaaggaacgtattaat
cccgagctaagtgatggaatgaatggttatatatctccatgttctggagatacccaccct
gccatattcaggtctccagttggtgacatggaagacaattcggacaatagagtcatatgt
gctgtatacagacttcctgacccacatagacacattactaggcctcctactggtgttata
ttccttgacaagctcccagaaggaatcatggcttcagaaaaactcacggctttagagttt
acatgggaggaacacatgtatcttcagaaggatcaacctatttcttccagtacagctggc
gtggcagaggtgtcttggaagacaaaggaaaagtccaaaaaaatttggattgagaaacaa
agaatttccgcgccgcgaaataaagctaaagaagatgcatttcgggaagctaataagaag
ctatttcaggaggcagtaaaaaaacgagaaaaactcagggaggaatattatagcaatcca
gctaatccacgtctgaaaccatgtgaagaacctgaggaatggatctcttctgagcgtgat
atgacggaagaagagaatgaaagatatgcccgacaagtcatagagagcgatggatttgat
gtggacaaatttccggggacgtgcgcatttggaaggattgaaccacttcctactgaaaac
gaggttgtgagaaatgaattcaatgtttatgctgaaaaagctatagaacactacaatgat
aataatgatactaattatgagtttttggagttagagaaagtgaatgtgttagctgtagga
cttactactaccatctataccactttgagagccaaggataaagaaaccggtgcagttcgt
acctttcaggcttcggcgtactcggagcttatacgaagacgtcacggtgtatttgaggtt
acattgtgtaggttgaagttgtaa
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