Mercurialis annua (annual mercury): 126686756
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Entry
126686756 CDS
T10153
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mean00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126686756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mean03041
]
126686756
Enzymes [BR:
mean01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126686756
Spliceosome [BR:
mean03041
]
Complex C
Other components
Step II factors
126686756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
S1
AAA_22
DEAD
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
Sigma54_activ_2
AAA_16
TsaE
Flavi_DEAD
ABC_tran
nSTAND_NTPase5
PhoH
T2SSE
NB-ARC
Motif
Other DBs
NCBI-GeneID:
126686756
NCBI-ProteinID:
XP_050236940
LinkDB
All DBs
Position
LG6:39348729..39354915
Genome browser
AA seq
1142 aa
AA seq
DB search
MNRLEKELYYMATTKKKMKSQKRDGENNDFFGELEYLSLVSKVCTELESHLGSKLGYGKK
VLAEYIMELGRNSRTVDEFDAMLKEYELNMPDYFVRTLLTIIHAILPPSLPKPDAAAANN
ISIDDPRKSKIEDRGRDRDMDRDRDERRREDRSRASQRDRYDRYRRDGSDQRESRRSRRY
IHGGPELYNVYKGKVSRVMDSGCFVQLIDLRGREGLVHVSHMATRRIGNAKDVVKRDQDV
FVKVISVSGQKLSLSMRDVDQNTGEDLLPLKKTYDSDDDTFRTNPSGSKDGTVTRTGISG
IRILEEDGTVPLRRPLKRMSSPEKWEAKQLIASGVVSIRDFPMYDEEGDGLLDQEEGAEE
ELEIELNEEEPAFLQGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQR
TMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSADDIPEWKKDAVGKALTFGQRSKL
SIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQITQYLAEAGYTTRGKIGCT
QPRRVAATSVAKRVAEEFGCRLGEEVGYAIRFEDCTGQDTVIKYMTDGMLLMEILIDESL
SQYSVVMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFT
IPGRTFPVEILYAKQPESDYLAASLMTVLQIHLTEPEGDILLFLTGQEEIDFACQSLYES
MKGLGKDVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVID
PGFAKQNVYNPKQGLDSLIITPISQASAKQRAGRAGRTGPGKCYRLFTESAYRNEMSPTS
IPEIQRINLGLTTLTMKAMGINDLLLFDFMDPPSPQALISAMEQLYNLGALDEEGLLTKL
GRKMADFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFF
QPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDRYKLDVVSA
GKNFTKIRKAITAGLFFHGARKDSQEGYRSLVENQPVYIHPSSALFQRQPDWGIYHELVM
TTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDKYHEPNSWRSNKR
RA
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaataggcttgagaaggaattgtattatatggctaccaccaagaaaaaaatgaagtca
caaaagcgagatggagagaataatgatttttttggggaattggaatacctgtcactggta
tcaaaggtatgtacagagcttgaaagtcacttagggagtaagttagggtatggaaaaaaa
gtgttggctgagtacattatggaattggggcgtaacagccgcaccgttgatgaatttgat
gcaatgcttaaggaatacgagttgaacatgccggattattttgtccgtacactccttact
atcattcatgccattctccctccttctctccccaagccggatgctgctgctgctaataat
attagcatcgatgatcctcgtaagtccaagatcgaagacagaggtcgagacagggacatg
gatagagatagagatgagagacgtagagaggataggagtagagcgagtcagagggatcgg
tatgataggtataggagagacggcagcgatcaaagggaaagtaggaggagcaggcgttac
attcatggtggtcctgaattgtacaatgtatacaagggtaaggtgtccagggtgatggac
tctggttgttttgtgcagcttattgatttaaggggcagagaaggcttggttcatgtttcg
catatggctactaggaggattggtaatgctaaggatgttgtcaagcgtgaccaggacgtt
tttgttaaagtcatttcagtttcagggcagaagttgagtctttccatgagggatgttgat
caaaatactggcgaggatcttcttcctttaaagaagacatatgacagtgatgacgatact
tttagaactaacccatctggttccaaggatgggacagtcactagaactgggatttctggg
attaggatcttggaagaggatgggactgttccattgcgtcgcccactgaagagaatgagc
tcaccagagaaatgggaagcaaaacagttgattgcttctggtgttgtaagcatccgagac
tttcctatgtatgacgaggaaggagatgggctgctcgaccaagaagagggagccgaggaa
gagcttgaaattgaattaaatgaagaagagcctgcctttttgcaaggccagactcggtac
tctgttgatatgtcaccagtgaaaatatttaagaatcccgaaggatccttgagtcgtgct
gctgcacttcagtctgcactgataaaggaaagaagagaagttagggaacagcagcagaga
accatgcttgattcaatacctaaggatcttaatcgtccttgggaggacccaatgcctgag
actggggagaggcatctcgcacaggagcttagaggtgtcggcttatctgctgatgacata
cctgaatggaaaaaggacgcagttgggaaagctttgacatttggccaaagatctaagctg
tctattcaggaacagaggcagagtttgccaatctacaaattgaagaaggagttggttcaa
gctgtccatgataatcaggttctagtagttattggcgagacaggctcaggtaagactacc
cagataacgcagtatcttgctgaggctggttatactactaggggtaagattggatgcact
caacctcgacgtgtggctgcaacgtctgtggccaagagggtggctgaagagtttggttgt
cgtttaggggaggaggttggatatgccattcgttttgaggactgtactggacaagatact
gtgatcaagtacatgacagatggtatgctacttatggagattctgattgatgaaagtctt
tctcaatattcagttgtaatgcttgatgaagctcatgagaggacaatccacactgatgtt
ctttttgggttacttaaacagcttgtgaagaggagacctgatcttcgcctgattgtcaca
tctgccacactggatgctgagaaattttcgggttatttctttaactgtaatatattcaca
attcctgggagaacgtttcctgtggagatcttatacgctaaacagccagaaagtgactat
ttagctgcatctttgatgaccgtgctacaaatacatttgacagaacctgagggtgacata
cttcttttcttgactggtcaggaagagattgattttgcatgccaatctctctatgagagt
atgaaaggattaggtaaagatgtgcctgaactaatcatattgcctgtttatagtgccctt
cccagtgaaatgcagtccaggatttttgaacctgcccctccagggaagcgaaaggtggtt
gtggcaaccaatattgctgaggcctccttgactattgatgggatattttatgtgatagat
cctgggtttgcaaagcagaacgtatataatccaaagcaaggccttgattctctcatcata
accccaatttctcaagcatctgctaagcaacgagctggacgcgccgggcgtactgggcct
ggaaagtgttatcgtctattcactgaaagtgcataccgtaatgagatgtcccctacatca
attccagaaattcaaaggataaatcttggacttaccacacttactatgaaggcaatggga
attaatgatctcctcttatttgattttatggatccaccttcaccccaggccctcatatct
gccatggagcagctatacaatttgggagctttagatgaagaggggcttctgacgaaattg
ggaaggaaaatggcagactttcccctggatccgccattgtccaagatgctgctggcaagt
gtagatctcggatgtagtgatgaaattttgactatcattgccatgatccaaactggtaac
atattctacagaccaagggagaaacaagctcaagctgatcagaagagggccaagtttttc
cagcctgaaggagaccatttaaccttacttgctgtatacgaggcttggaaagctaagaac
ttttcagggccttggtgttttgagaattttgttcagtccagatccttgaggagggctcaa
gacgttaggaaacagcttctttcaataatggatagatacaaattggatgttgtgagtgct
gggaagaattttactaaaataagaaaagccattactgctgggttattttttcatggagcc
agaaaggattcacaggaaggttataggagcctagttgagaaccagccagtttatatccac
ccaagcagtgctctttttcaaagacagcctgactggggcatctatcatgaactggtaatg
actacaaaggaatacatgcgtgaggtaactgttatagatcccaaatggcttgtggaactg
gcacccagattctttaaagtggcagatccaacaaaaatgagcaagcgcaagcgtcaagaa
cgaattgagcctctatatgacaaatatcatgaacctaattcatggcgatcgaacaaacga
cgagcatga
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