Mercurialis annua (annual mercury): 126687488
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Entry
126687488 CDS
T10153
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
mean Mercurialis annua (annual mercury)
Pathway
mean03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mean00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
126687488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mean03021
]
126687488
03019 Messenger RNA biogenesis [BR:
mean03019
]
126687488
Transcription machinery [BR:
mean03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
126687488
RNA polymerase I system
126687488
Messenger RNA biogenesis [BR:
mean03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
126687488
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW6_SPT51-2
KOW
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
KOW6_SPT5
DUF4438
ProQ_C
Motif
Other DBs
NCBI-GeneID:
126687488
NCBI-ProteinID:
XP_050238009
LinkDB
All DBs
Position
LG1-X:complement(70394484..70403334)
Genome browser
AA seq
1046 aa
AA seq
DB search
MARHRDDDDDEGFDGEDEEYGEREQGMDELEEEEEELEEEQDKRGSNRKRRRSDFIDDAA
EEDDEEEEEEDDDDDDYGSGARGKKAKRRSGTQFFDLEAEVDSDDDEEEDDDAEDDFIVD
NGADLPDEDDGRRVHRRPLLPREDEQEDVEALERSIQARYARSSHTEYDEETSEVDQQAL
LPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGAELQIRSAIALDHLKNFIYVEADKEA
HVREACKGLRNIYAQKIMLVPIKEMTDVLSVESKALDLSRDTWIRMKIGIYKGDLAKVVA
VDNVRQRITVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNVDEARELHIRVERRRD
PMSGDYFENIGGMLFKDGFLYKTVSTKSISVQNIKPTFDELEKFQKPGENDGDNVGLSSL
FANRKKGHFVKGDAVIIVKGDLKNLKGWVEKVDEENVHIRPEMKGLPKTIAVNEKELCKY
FEPGNHVKVVSGTQEGATGMVLKVDHHVLIILSDTTKEDIRVFADDVVESSEVTTGISKL
GEYELHDLVMLDNNSFGVIIRVESEAFQVLKGVPERPEVALVRLREIKCKIDKKFNVQDR
YKNTISVKDVVKIMDGPCKGKQGAVEHIFKGVLFIYDRYHLEHAGFICAKSHACGVVGGT
RASGDRNGDSYSGLSNLKPSPRVPPSPRRFPRGGPPFESGGRNRGGRGGRDSMVGTTVKI
RLGPFKGYRGRVVDIKGQSVRVELESQMKVILVDRSNISDNVVVSTPHRDSSRYGMGSET
PMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGS
SPQYQSGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDSSSAYVNAPSPYLPSTPGQPM
TPSSAAYLPGTPGGQPMTPGTGSLDVMSPVIGGDSEGPWFMPDILVNVRKSSDDSAIGVV
REVFGDGSCKIALGANGNGETMTAFSSEIEVVVPRKSDKIKIMGGAHRGATGKLIGVDGT
DGIVKVDDTLDVKILDMVILAKLAQP
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcatagagacgacgacgatgacgaggggtttgacggcgaagacgaagaatac
ggagagcgagaacaggggatggacgaattagaagaagaagaggaagaattggaagaagaa
caagataaaagaggatccaataggaagagaaggagatcagattttattgatgacgctgcc
gaagaagatgacgaagaggaggaagaagaagatgacgacgacgatgactatggcagcggt
gcaaggggaaagaaagccaaacgaaggtctggcacgcagttttttgacctggaagctgag
gttgatagtgacgatgatgaagaggaagatgatgatgctgaggatgattttattgttgat
aatggagctgatctacctgatgaagatgatggtagaagggttcatcgtagaccattgctt
cctcgggaggatgagcaagaagatgtggaagctcttgagagaagcattcaagcaaggtat
gcaaggtcaagtcacacagaatatgacgaagagacatcagaggtggatcaacaagctctt
ctgccatctgttcgggatcctaaattatggatggtgaaatgtgcgattggtcgtgaacga
gagacagctgtttgccttatgcaaaagtatattgataaaggagctgaattgcaaatccgt
tctgctattgctcttgatcatctcaagaactttatctatgttgaagcagacaaggaggcc
catgtgagggaggcatgcaaaggtctgcgaaacatttatgcacagaaaataatgctggtc
ccaattaaagaaatgactgatgttctttcagttgaaagcaaagcactagatctttcaagg
gatacctggattagaatgaagattggaatatacaagggagaccttgctaaagtagtagct
gtggataatgtgcgacagagaattacagtgaagttaataccaaggatcgacttacaggct
cttgcaaataaactggagggcagagaggttgccaaaaagaaagcttttgtccccccacca
cggtttatgaacgtagatgaagctagagaactacatattcgcgtggaacgaagaagggac
cctatgagtggtgattattttgaaaacattggtgggatgctgtttaaagacgggttctta
tataaaacagtgtcgacgaaatcaattagtgttcagaacatcaaaccaacttttgatgaa
cttgaaaagtttcaaaagcctggggaaaatgatggtgataatgtgggtttgtcaagctta
tttgcaaacagaaagaagggtcactttgtgaagggcgatgcagttattatcgtcaaggga
gatttgaaaaaccttaagggatgggtggagaaggttgatgaagagaatgttcatattaga
cctgaaatgaagggccttcctaaaactattgcagtcaatgagaaggagctttgcaagtat
tttgaaccgggtaatcatgtgaaggttgtatctggtacccaggagggtgcaaccggcatg
gttcttaaggttgaccaccatgttctcatcattttgtcggatacgaccaaggaagatatc
cgtgtttttgctgatgatgtcgtggaaagttctgaagtgaccactggcatctcgaaactc
ggagaatacgagcttcatgatcttgtgatgttggataataatagctttggtgttataata
cgtgtggaaagtgaagcatttcaggttctcaagggagtaccggaaagacctgaggttgct
cttgttaggctgagagagattaaatgcaagattgacaagaaatttaatgtgcaagatcgg
tacaagaatactatatcagtgaaggacgttgttaaaataatggatggtccttgcaaagga
aaacaaggtgctgtggaacacatattcaaaggagtcttgttcatctacgatcgctatcac
cttgaacatgctggatttatatgtgctaaatcccatgcatgtggtgttgttggaggaacg
cgagccagtggtgacagaaatggggattcctactctggacttagcaatcttaaaccttcc
cctcgtgtacccccatcaccaaggagatttccaagaggaggtcctccatttgagtctgga
ggaaggaaccggggtggaagaggagggcgtgatagtatggtgggtacaacagtgaagata
cgcctgggacctttcaagggttaccgtgggcgagttgtagatatcaaaggccagtctgtt
cgggttgagttggagtctcaaatgaaagttatcttagttgatcgaagtaatatctccgac
aatgtggttgtatctactccacaccgcgactcatctcggtatggtatgggaagtgaaact
ccaatgcatccttctcggactccattgcacccgtacatgactccaatgagagatgcagga
gcaactcctattcatgatggcatgagaacgccaatgcgtgaccgagcatggaatccttac
gcgccaatgagtcctccaagggataattgggaagatggaaatcctggttcatggggatcg
agtccacagtatcagtcgggaagtcctccttctcgggcatatgaagctccaactcccggt
tcaggttgggctagcactcctggtggtagttacagtgatgctgggacaccaagggatagc
agttcggcttatgtcaatgctccaagtccatatttgccgtcaactcctgggcagcctatg
actcctagttctgcagcttacctccctggtactcctggagggcagccaatgacgcctgga
actggcagtcttgatgttatgtctcctgttataggaggggacagtgaaggaccatggttc
atgccagacatattggttaatgttcgaaaatccagcgatgactctgctattggtgttgtc
agggaggtttttggggatgggtcgtgtaagatagccctgggggcaaatgggaatggcgag
acaatgacagcattttcaagcgaaatagaggtagtagtacctagaaaatcagataagatc
aagatcatgggcggtgcacatcgtggtgccacaggcaagttgattggtgtagatggcact
gacggaattgtaaaagtagatgatactcttgatgttaagatattagacatggttatactt
gctaaactggctcaaccatga
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