Methylacidimicrobium sp. AP8: MTHMO_0343
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Entry
MTHMO_0343 CDS
T06915
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
meap
Methylacidimicrobium sp. AP8
Pathway
meap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTHMO_0343 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meap03021
]
MTHMO_0343 (rho)
03019 Messenger RNA biogenesis [BR:
meap03019
]
MTHMO_0343 (rho)
Transcription machinery [BR:
meap03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MTHMO_0343 (rho)
Messenger RNA biogenesis [BR:
meap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MTHMO_0343 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA
S1CSD-TOTE-2
AAA_25
ATPase_2
Spore_III_AA
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAB4242689
LinkDB
All DBs
Position
I:347167..348630
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AA seq
487 aa
AA seq
DB search
MNADEIDREKGESSKSAWAGAGQWDGGAPSEEHRPPRSGHPVRPSERRGGEQQNRKEEDG
DARPPTTGQPLSLGELQRLSFAELQQKAAEYQIENPGLLRKHELIFETLRRHAQRNGPIF
GEGVLEVLPEGYGFLRSPAYNYFPCPEDVYVSPALIRRNGLKKGNLVSGPIRHPKEKERY
FSLLQVDLVEGEEPEKVRNRIFFDNLTPLFPNRRIFLEGKSKDPSLRVIDLVTPIGFGQR
GLIVAPPRTGKTVLMQKIANAISENHPQAHLIVLLVDERPEEVTDMERSVRGEVISSTFD
ETPERHVQVAEMVIERAKRLAETKVDVVILLDSLTRLARAYNTLQPHSGKILTGGVDANA
LQKPRRFFAAARNLEEGGSVTILATALIDTGSKMDDVIFEEFKGTGNMEIHLDRALVDKR
IYPAINISKSGTRKEELLYHPDEIARIHVLRRALSSVPPVEAMELLLERLRKTKSNVEFL
LSMNLKE
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcagatgaaatcgatcgggagaaaggcgaatcttccaagagcgcatgggcggga
gctggtcagtgggacgggggcgcgccttccgaagagcaccgaccgcctcggagcgggcat
cctgtccggccctccgaacgtcgcggcggagaacagcagaatcgcaaggaggaagatggg
gacgcgcgtcctccgacgaccggccagccgctcagcctgggagagctccagcgcctctcc
tttgccgaactccagcagaaagctgccgagtatcagatcgaaaatcccgggttgctgcgg
aagcacgagttgatcttcgaaacgttgcggcgccatgcgcagcgcaacggcccgattttc
ggcgaaggggttctggaggtactccccgagggctacggcttcctgcgatcccccgcctac
aactatttcccttgcccggaggacgtctacgtttcgcccgccctcattcggcgcaacggc
ctcaagaaagggaacctggtctcgggtcccatccgccatccgaaggaaaaggagcggtat
ttctccctcctccaggtcgatctggtcgaaggggaagagccggagaaggttcgcaatcgc
atcttcttcgataatctgacccccctcttcccgaaccgccgcatcttcctcgaaggcaag
tccaaagacccttccctgcgcgtgatcgacctggtcacgccgatcgggttcggtcagcgc
gggctgatcgtggctccgcccagaaccgggaaaacggtcctgatgcagaagatcgccaac
gcaatcagtgaaaatcacccgcaggcccacctgatcgtgctgctcgtcgacgagcgtccc
gaagaggtcaccgatatggagcgctccgttcgcggcgaggttatcagttcgacctttgat
gagaccccggaaaggcatgtccaggtggccgagatggtcattgagcgggcgaagcgcttg
gcggaaaccaaggtggatgtggtcatcctgctcgattcgctgacccggcttgcgcgcgcc
tacaacactctgcagccgcatagcgggaagatcctgaccggcggcgttgacgcgaacgcc
cttcagaagccgcggcgcttttttgcggcggcgcggaacctggaagaaggcgggagcgtg
acgatcctggccacggctctgatcgataccgggtcgaagatggacgacgtcatcttcgaa
gagttcaagggaaccggcaacatggagatccatctcgaccgggcgctggtcgacaagcga
atctatcccgcgatcaacatctcgaagtcgggcacacggaaagaagagctgctctaccat
cccgacgagatcgcacggatacatgtcctgcgccgcgcgctttcctccgtgcctcccgtg
gaagccatggagctgctgctcgaacggctccgaaagaccaagagcaacgtcgagtttctt
ctctcgatgaacctcaaggagtag
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