Methylacidimicrobium sp. AP8: MTHMO_1002
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Entry
MTHMO_1002 CDS
T06915
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
meap
Methylacidimicrobium sp. AP8
Pathway
meap02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
meap00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MTHMO_1002 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meap03021
]
MTHMO_1002 (rpoD)
Transcription machinery [BR:
meap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MTHMO_1002 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
DUF3452
Motif
Other DBs
NCBI-ProteinID:
CAB4243340
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All DBs
Position
I:982810..984591
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AA seq
593 aa
AA seq
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MHSPTANKTDHAAENGHSAVVPAQPPLPSVPLVVEEQQLAQKLAKIWSDEPLRQEKLRAL
VKLAKEQGYLTYDDINEALPDCVPQPDEIEAIIAFLRSLEIDVIESSEVDRQKSPAPAET
GMAAEEKEAKLDILDDPVRMYLRQMGQVPLLTREEEVEISKRIENAELMVQKCLHSFGFI
AREYLNLARKLEQGRERFDRLIQDKHIEGRDAYMKILPGLMKKLEEKIEESDATYVRMSE
LPAGSKEREKLAKELEKQHQALEKIVRRFYFKQKVVEDLVQVSEERFQEICRWENERKRL
RAQGRGAKTAEALAAVEEQLQQFQRQAHAGIEEFKRKHNELKKWLQQAMRAKTEMVEANL
RLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIA
DQARTIRIPVHMIETINKLMRVQKQLIQELGREPNPEEIADEIQLSVDRIRAILKMAQQP
ISLQSQVGESDDTTFGDFIEDKSAENPSEMTAYSLLKEKIRDVLHTLTERERTVIEQRFG
LLDGYPRTLEEVGRQFRVTRERIRQIEAKALRKMRHPTRLRHLEGFLEANRGF
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcattccccgactgcgaacaagacagaccacgctgcggaaaacggccattcggccgtc
gtccccgctcagccgcccctgccgtccgtcccgctcgtcgtcgaagagcagcagctagcc
caaaagctcgccaagatatggtctgatgagccgctacggcaggagaagctgcgggcgctg
gtcaagctcgccaaggagcagggctatctcacttacgacgacatcaacgaggctcttccc
gattgcgtgccgcagcccgacgagatcgaggcgatcatcgccttcttacggagcctggaa
atcgatgtcatcgaaagctccgaggtcgatcggcagaagagcccggcgccggcagaaacc
ggaatggcggccgaggaaaaggaggccaagctcgatatcctcgacgacccggtgcggatg
tatctgcggcagatgggacaggtgcctctgctgacccgcgaggaggaggtggagatttcc
aagcggatcgagaacgccgagctgatggttcagaagtgcctccatagcttcgggttcatc
gctcgggaatacctaaacctagcccgcaagctcgagcaggggcgggagcgcttcgaccgg
ctgattcaagacaagcatatcgaagggcgcgatgcctacatgaagatcctgcccggcctc
atgaagaagctcgaggagaagatcgaggagagcgatgccacctatgtccgaatgagcgaa
ttgccggccggctcgaaagagagggagaagctcgccaaggaattggaaaagcagcatcaa
gccctcgaaaagatcgtgcgccgcttctatttcaagcagaaggtcgtcgaggatcttgtg
caggtaagcgaagagcgctttcaggaaatctgccggtgggagaacgagaggaagcggctc
cgcgcccagggacgcggggccaagaccgcagaggcgctggcggccgtcgaggagcagctg
cagcaattccagcggcaggcccacgccgggatcgaggagtttaagagaaagcacaacgag
ctcaagaaatggttgcagcaggcgatgcgggccaagaccgagatggtcgaagccaacctc
cggctggtgatctcgattgcgaagaagtacaccaatcgcggcctctccttcctcgatctc
atccaggaaggaaacatggggttgatgaaggcggtcgagaagttcgagtaccgccgaggc
tacaagttttcgacctatgcgacctggtggatccgccaggcgattactcggagcattgcg
gatcaggctcggaccattcggattccggtgcatatgatcgagacgatcaacaagctcatg
cgggtccagaagcaactgattcaagagctgggccgggagccgaatccggaggagatcgcc
gacgagatccagctgagcgtcgatcgcatccgagcgattctcaagatggcccaacagccg
atctccctacaaagccaagtcggcgagagcgacgacacgacctttggcgacttcatcgag
gacaagtcggcggaaaatccttctgagatgaccgcctactcgcttctcaaggagaagatc
cgcgacgtgctgcacactctcaccgagcgagagcgaacggtgatcgagcagcgcttcggg
ctgctcgacggctacccgcgcacgctggaggaggtcggtcggcagttccgcgtcacccgc
gagcggatccggcagatcgaagccaaagcccttcggaagatgcgccatccgactcgactg
cgtcatctcgaaggctttctcgaagccaatcgaggcttttag
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