Methylacidimicrobium sp. AP8: MTHMO_1868
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Entry
MTHMO_1868 CDS
T06915
Symbol
cafA
Name
(GenBank) Ribonuclease G and E
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
meap
Methylacidimicrobium sp. AP8
Brite
KEGG Orthology (KO) [BR:
meap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meap03019
]
MTHMO_1868 (cafA)
03009 Ribosome biogenesis [BR:
meap03009
]
MTHMO_1868 (cafA)
Messenger RNA biogenesis [BR:
meap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MTHMO_1868 (cafA)
Ribosome biogenesis [BR:
meap03009
]
Prokaryotic type
rRNA processing factors
MTHMO_1868 (cafA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
CAB4244206
UniProt:
A0A7R8L8C3
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All DBs
Position
I:1790794..1792365
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AA seq
523 aa
AA seq
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MFFDRIRRWVRLKPNANTKEIAISCEPLEYRVALLEDGQLEELAIERRGQRGIAGNIYKG
RVNNVEPALKALFVDIGVGKNAFLHYWDAIPAALDASFETVERRRRKSKARPPRADDIPK
IYPAGSEVVVQVTKGPIGTKGARVTTNISLAGRYLVLTPFSEQFGISRKIEDPKERARLR
KILDSLDVPEGMGLIFRTVGEGARARYFVRDLALLLQQWQEINDKIRSLPAPSLVYQEPD
LIQRTVRDFLTDDVERILIDDEEEAKRVREMVGLISSRSQKKIVSYKDPTPLFERLNIEK
QIDTAFGRKVELASGGYIVIDETEALVAIDVNTGRARCGRDQGGAIFQTNMEAAREIARQ
LRLRNIGGLIVIDFIDMKSRREGEAVVQRLKECVRRDKAKINILPMSDFGLVQMTRQRVQ
ESIRHSLYVPCPTCQGRGMVKSPETMSIEIQRAIVRAMRLHPEVKELRVLVLPSTLERLK
TEDEELLLDLERRLQGKLYFRTDTRLGAEQFTLLNAITGEEIT
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtttttcgaccgaatccggcgttgggtccgtctgaagccgaacgcgaacacaaaggaa
atcgccatcagctgcgagccgctggagtaccgggtcgccctcctggaagatggccagttg
gaagagttggccattgaacggcgcgggcagcgcgggatcgccggcaacatctacaagggg
cgcgtcaacaatgtggagcccgccctcaaagcgctcttcgtcgacatcggggtggggaaa
aacgcattcctccactattgggacgccattcccgccgccctcgatgcaagcttcgaaacg
gtcgagcggcgcaggcgcaaaagcaaagcccgtcctcctcgggccgacgacatccccaaa
atctacccggccggctccgaggtggtcgtccaggtcaccaaaggccccatcggaaccaaa
ggggcccgtgtcaccaccaatataagcctggccggccgatatctggtgctcaccccgttc
agcgagcagttcggcatctcccgaaaaatcgaggacccgaaggagcgtgcgcggctccgg
aagatcctcgactcgctcgacgttcccgaaggaatggggttgatcttccgcacggtgggg
gagggcgcgcgagcgcgctatttcgtccgggatctggccttgctcctccagcaatggcaa
gagatcaacgataagatccgctccctgcccgctccgagccttgtctaccaagagccggat
ctcatccagcggacggtgcgggattttctgaccgacgacgtggagcggatcctcatcgat
gacgaggaggaagccaagcgcgtccgcgagatggtagggctcatttcctcccgatcgcag
aaaaagatcgtctcctacaaggatcccaccccgctcttcgaacggctcaacatcgaaaaa
cagatcgacaccgccttcggccgaaaggtggagctcgccagcggcggctacatcgtgatc
gatgagaccgaggctctcgtcgccatcgatgtcaacacggggagggcccgctgcggacgg
gaccaaggaggagccatattccagaccaatatggaggccgcgcgggaaatcgcgcggcag
ctgcgcctgcgcaacatcggaggcttgatcgtgatcgatttcatcgacatgaagagccgc
cgggaaggagaagccgtcgtgcagaggctaaaggaatgcgtgcggcgcgacaaggcgaag
atcaacattctgcctatgtccgacttcggcctcgtccagatgacccgacagcgcgtccag
gaaagcatccggcactccctctatgttccgtgccccacctgccagggacgggggatggtc
aagtctccggaaaccatgagcatcgagattcagcgggccatcgtccgggccatgcggctc
catccggaggtcaaggagcttcgcgtcctcgtccttccttcgactctcgaacgattgaaa
accgaagatgaggagcttctgctcgacctcgagcggcggcttcaggggaagctctatttc
cggaccgatacccgcctgggagccgagcagttcacgcttctcaacgcgatcacgggcgaa
gaaatcacctga
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