Candidatus Methanoplasma termitum: Mpt1_c03030
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Entry
Mpt1_c03030 CDS
T03540
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mear
Candidatus Methanoplasma termitum
Pathway
mear03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mear00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mpt1_c03030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mear03019
]
Mpt1_c03030
03009 Ribosome biogenesis [BR:
mear03009
]
Mpt1_c03030
Enzymes [BR:
mear01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mpt1_c03030
Messenger RNA biogenesis [BR:
mear03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mpt1_c03030
Ribosome biogenesis [BR:
mear03009
]
Prokaryotic type
rRNA helicases
Mpt1_c03030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_22
AAA_30
Flavi_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIZ56201
UniProt:
A0A0A7LFD4
LinkDB
All DBs
Position
324684..326177
Genome browser
AA seq
497 aa
AA seq
DB search
MEKFEDLGINKHVVKAMREIGWIEPTPIQTEAIPAGIEGKDILAQAQTGTGKTGAYASVV
LTRTAAKSRRPSALILAPTRELACQIENEMYKLSKYSGHSSTVVYGGASIEAQIKDIRKG
RDIVVGTPGRLKDLITRDVLDLSQVSVVVIDEADRMLDMGFADELNFIMDEVPKQRQTLL
LSATMAEEVKHLALKYMKDRVDISVSKDEICSDLTEQYYIQMPRDKKEHALKAILRKGCK
AIVFCQTKRMVDVLYNDLSDDFRVGIIHGDIEQNKRERAIKKFRDDQTAILIATDVAARG
IDVNNIDCVINYDIPNDAETYLHRIGRTGRAGNKGIAITFVTKPEKRFIKICEREMGKTI
SPMVPDDLVLSEREETKPIERTVVERAAAAPVAVPQTDAGSQNKMVPLQINLGKEDKFSR
SQLSMFIKKNASLDDDSLGRVGLGQSSSYVEVSHGSVNTVLNAMTGAEWRGKKISMNVAP
KKLRYKDKEAAGLYITG
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattcgaagatctgggcataaacaaacacgtcgtaaaggcaatgagggagatc
ggttggatcgagccgaccccgatacagactgaagcaatacccgcaggtatcgaaggaaaa
gatattttagcacaagcgcagaccggtaccggaaagaccggcgcttacgcttcggtggtt
ctgacgcgcacggcggcaaagtcacgcagaccgtcggcactcatactcgcgcccacgagg
gaactggcctgtcagatcgagaatgagatgtacaaactgtcaaaatattccggccacagc
agtacggtcgtgtacggcggagcgagcatcgaagctcagataaaggacatccgcaaagga
agggacatcgttgtcggaactcccggaagacttaaagacctcattaccagagatgttctg
gacctttcacaggtatcagttgtggtgatcgacgaagccgacaggatgcttgatatggga
ttcgccgacgaacttaatttcataatggacgaggttcccaaacagaggcagacgctcctg
ttatccgccacgatggcggaagaagtgaaacaccttgcactcaagtacatgaaagacaga
gtggatatctcagtatccaaggatgagatatgctcggaccttaccgaacaatactacatc
cagatgccgagggacaagaaggagcacgccctgaaggcgatactcaggaaaggatgtaaa
gcgatcgttttttgccagacaaaaaggatggtcgatgttctgtacaatgatctttcagat
gatttcagagtggggattatacacggggacatcgagcagaacaaaagggaacgtgcgata
aagaaattcagagatgatcaaaccgcgatcctcatcgcaaccgatgtcgccgccagagga
atagatgtgaacaacatcgactgcgtgatcaattacgacatccccaacgatgcggaaaca
tatctgcacaggataggcaggacgggaagggcggggaacaaaggcatcgcgataactttt
gtgaccaagccggagaaacgcttcataaaaatatgcgagcgcgagatgggaaaaacaata
tctcccatggtcccggatgatctggtactcagtgaaagagaagaaacaaagcccattgag
aggacagtcgttgaaagggcggcagctgcaccggttgcggtaccccagacagatgccgga
tcccagaataagatggtcccccttcagatcaatctcgggaaagaggataaattcagccgc
tcgcaattatctatgttcatcaaaaagaacgcatccctcgacgacgactctttgggaagg
gtcgggctcgggcagtcttcgtcatatgtggaagtgtcccatggaagcgtcaacaccgtt
ctgaatgcaatgacgggggcggagtggagaggaaaaaagatatccatgaatgttgcgccc
aaaaagctccgatacaaggacaaagaagcagcgggactgtacataacgggataa
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