Candidatus Methanoplasma termitum: Mpt1_c13890
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Entry
Mpt1_c13890 CDS
T03540
Symbol
rpoB1
Name
(GenBank) DNA-directed RNA polymerase subunit B'
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
mear
Candidatus Methanoplasma termitum
Pathway
mear03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mear00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Mpt1_c13890 (rpoB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mear03021
]
Mpt1_c13890 (rpoB1)
Enzymes [BR:
mear01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Mpt1_c13890 (rpoB1)
Transcription machinery [BR:
mear03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Mpt1_c13890 (rpoB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
C1_1
Motif
Other DBs
NCBI-ProteinID:
AIZ57250
UniProt:
A0A0A7LDJ5
LinkDB
All DBs
Position
complement(1414396..1417995)
Genome browser
AA seq
1199 aa
AA seq
DB search
MRELVKLYFAEKNIVNHHIASFDDFLATNRNPNSRMQKIVDDIRVPTDDAERGVIKLDPE
RTGGKNIEIRIGRKRDEDGHIDPQSKPTIKIDQPKVMEANGYSHELTPMEARLRNLNYLS
PVFVRFEVYEDGVEKEMPENERWVHVGDLPMMVKSNGCNLNHKVMEENMERKLSEDEYLA
ELVKQKEDPKEPGGYFIIGGTERVLITLEDLAPNRVMVEYNDKYGASVELAKVFSQKDGY
RALTLVEKKKDGMVMVSVPVASGSIPLIALMKALGMESDAEIYDTIVSDDAMANIVYANI
ENSLDKKAYPPNGYHTKEDAILFLERNFAAGQAKEYRTKKVESILDRSLLPHLGDTEADR
MKKAIFLGRIARSVLELSLKKRKEDDKDHYANKRLKLSGDLMEDLFRTSFSSLMKDLKYQ
LERNWGRKKSELNISSSIRPDLLTHKLLHALATGNWVGGRAGVSQLLDRTSNLSAMSHLR
RVTSSLTRSQPHFEARDLHPTQWGRLCPSETPEGQNCGLVKNVALIIDVSEGFSEKDVKW
MLRELGLGPVKEEGTRIYINGDLVGTHRDADKLVSEIRDRRRYGLLSNCINIRHDDEMKE
VIINCDEGRLRRPLLILKDGRTMLTRKHLEGIREGKVTWNTLFKEGIVEWMDAEEEEDTL
VVVDAYDVPKRCEHCKHALSEMDVDWLNPGQEESPVLRCKWCGEDFAVKAKITRDHTHME
IDPMVILGVASGIVPYPEYNSAPRVTMGAGMAKQALGIPASNYRIRPDTRGHVMHYPEVP
MVQTQTMEFMGYSHRPAGQNFCVAVLSYHGYNIEDALVMNRSSVQRGLGRSSFLRSYRAE
ERRYPGGQEDHFEIPSPDIMGARADFAYASLGEDGLISPESEVSGSDVLIGKTSPPRFLE
EETDFLTPQKRRETSVTVRPGEKGYVDSVMVTESENGSRLVRVKVRDERIPELGDKFCSR
FGQKGVIGRLVDQCDMPFTAEGVTPDLVVNPHGIPSRMTIGHVLEMIAGKVGAMEGRIID
GTAFSGEREGAIRDALVRNGFGMHGKEAMYDGRTGKLIQTEVYTGVIFYEKLHHMVSGKL
HVRSRGPVQILTRQPTEGRSRQGGLRFGEMERDCLIGHGAAMVIKDRLLDESDGTQQYIC
GNATCGHIAIMDRHGSLYCPVCKNNSSIYLVQTSYAFKLLMDELLSLGVAMRLQLEDLT
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgagagagttggttaagttatatttcgcagagaagaacattgtgaaccaccatatcgca
tcgttcgatgatttcctcgccacaaacaggaacccgaacagcaggatgcagaagatcgtg
gacgacatcagggtccccacggacgacgccgagcgcggtgtaattaagttagatcccgaa
cgcacaggcgggaagaacatagagataaggatcggaaggaagagggatgaggacggacac
atcgacccccagtcgaagcccactatcaaaatagaccagccgaaggtcatggaggccaac
ggctacagccacgagctcacacctatggaggccaggctcaggaacctcaactatctttcg
cctgttttcgtcagattcgaagtttacgaggacggcgttgaaaaagaaatgccggagaac
gagagatgggtccatgtcggcgaccttccgatgatggtgaagtcgaacggatgcaacctc
aaccacaaggtcatggaggagaacatggaacgcaaactctccgaggatgaatatctggcc
gagttggtgaaacagaaagaggatcccaaagaacccggagggtacttcattatcggcggg
acagagagggtcctgatcacgcttgaggatctggcccccaatagagtgatggtcgaatac
aacgacaagtacggagcctccgtagagctggcaaaagtgttctcccagaaggacggatac
cgtgcgctgacgctcgtcgagaagaagaaggacgggatggtcatggtatctgtccctgtc
gcatccggctcgatacctcttatcgctcttatgaaagcgctcggaatggagtccgatgcg
gaaatttatgatacaatagtctcggacgatgcgatggccaacatagtctatgcgaacatc
gagaactcgcttgacaagaaagcctacccgccgaacggataccacacaaaagaagatgcg
atactcttccttgagaggaacttcgccgccgggcaggcaaaggaatacaggacaaagaag
gtcgaaagcatcctggaccgctcgcttctgccccacctcggggacacagaggccgaccgc
atgaagaaagcgatcttcctcggacgcatagccagatcagtactcgagctgtcgctcaaa
aagaggaaagaggatgacaaggaccactatgcgaacaagaggctgaaactctccggcgat
ctgatggaagacctgttcagaacaagcttcagcagcttgatgaaggaccttaaatatcag
ctggaaaggaactggggcaggaagaagagcgagttgaacatatcctcatcgataaggccg
gatcttctgacgcacaaactgcttcacgcgctcgcaacgggtaactgggtgggcggacgc
gccggtgtatctcagcttctggacagaacatcgaatctgtcggcgatgtcccacctgaga
agggtgacatcctcccttacaagaagccagcctcacttcgaggctcgtgacctgcacccc
actcaatggggcagactgtgcccgtcggagacccccgaaggacagaactgcggtcttgtc
aagaacgttgcattgataatagatgtctcggaaggattctccgagaaagatgtgaaatgg
atgctcagggagctcggtctcggtcccgttaaagaggaagggaccaggatatacatcaac
ggtgacctggtcggaacacacagggatgccgacaaactcgtgtcggagataagggaccgc
agaagatacggtctcctttcgaactgcatcaacatacgccacgacgatgaaatgaaagaa
gtgatcatcaactgcgacgagggacgtctgagacgtccgctcctgatcctaaaggacggc
agaaccatgctcacgaggaagcacctcgagggaatacgcgaaggaaaggtcacatggaac
accctcttcaaagaagggatagtcgagtggatggacgccgaggaagaagaggacacactc
gttgtcgtggacgcctatgacgtacctaagagatgcgagcactgtaaacatgccctgtcg
gaaatggacgtcgactggctgaaccccggacaggaggaatcccccgttctcaggtgtaag
tggtgcggagaggatttcgcggtcaaagcgaagataacaagggaccacacgcacatggag
atagacccgatggtcatactcggcgttgcgtcgggaatagtcccgtatccggaatacaac
tccgcaccccgtgtgacaatgggggcgggaatggcgaagcaggctctcggtatacccgca
tcgaactaccgtatcaggccggacacaaggggacatgttatgcattacccggaggtaccg
atggtacagacccagacaatggagttcatgggatacagccacaggcccgcggggcagaac
ttctgcgttgccgtcctgtcataccacggctacaacatcgaagatgcattggtcatgaac
aggagctcggtgcagagaggtctcggaaggtcaagcttcctcagatcgtaccgtgcggaa
gagcgccgctacccgggcggacaggaggatcatttcgagatcccgtcgcccgacataatg
ggtgcgcgtgccgacttcgcatacgcgtcgctcggcgaggacggactcatatctccggaa
tcggaagtttccggaagcgatgtcctgataggaaaaacatctccccccagattcctggag
gaagagacggacttcctgacccctcagaaaagaagggaaacatccgtgaccgtaaggccc
ggagaaaaaggatacgtcgactctgtgatggtgactgagtcggagaacggttcaagactt
gtgcgtgttaaagtaagggacgaaaggatcccggagctcggcgacaagttctgttccaga
ttcggacagaaaggtgtcattggaagactggtggaccagtgcgacatgccgttcacagcg
gaaggtgtgactccggatcttgttgtcaacccccacgggataccgtcccgtatgaccatc
ggacacgtactggaaatgatagcaggtaaggtcggtgcgatggaaggccgcatcatcgac
ggaacggcattctccggagaaagagagggtgcgatacgcgatgcgttggtaaggaacggt
ttcggcatgcacgggaaggaagcgatgtacgacggaaggacaggaaaactgatccagacc
gaggtctacacgggagtgatcttctacgagaagctgcaccacatggtcagcggaaagctg
catgtacgttccagagggccggtccaaatactcacaaggcagcccaccgagggacgctcc
agacagggaggtctaagattcggtgagatggagcgtgactgtctgatcggtcacggcgcc
gcaatggtgatcaaggaccgcctgctcgatgagtcggacggcacacagcagtacatctgc
ggcaacgccacatgcgggcacatcgcaataatggacaggcacggctcgctgtactgtccc
gtatgtaagaacaattcaagcatatatctcgtgcagacatcctatgccttcaaactgctg
atggatgaacttctgtctctcggtgttgctatgaggcttcagctggaggacctaacatga
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