Methanobrevibacter sp. AbM4: Abm4_0347
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Entry
Abm4_0347 CDS
T02687
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B RpoB
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
meb
Methanobrevibacter sp. AbM4
Pathway
meb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Abm4_0347 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meb03021
]
Abm4_0347 (rpoB)
Enzymes [BR:
meb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Abm4_0347 (rpoB)
Transcription machinery [BR:
meb03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Abm4_0347 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DUF7167
DUF5817
RNA_pol_Rpb2_45
Zf_2nd_IFT121
Motif
Other DBs
NCBI-GeneID:
15797840
NCBI-ProteinID:
AGN16255
UniProt:
R9SIG8
LinkDB
All DBs
Position
413789..417142
Genome browser
AA seq
1117 aa
AA seq
DB search
MTKETWELVDAFFDEYNLVDHHIKSYNDFVNNRIQKIIDITDPISLENGKYTVRTGKLHI
EPPFTKEADGSKSSIYPTEARLRNLNYSAHMYLEMALDIEGEPEADFEDVYIGELPVMLK
SNICHLHGLTDEELIEKGEDPQDPGGYFIVNGSERAVVTMEEIAPNKIILERIGEVEDRR
AKAIVTSIKSGFRARISLEYKKPRKSGVFLRISFPYVPGEIPLVILLRALGLSTDQEIIT
AISDDFNFQMMIADDIQVSEDSLKLDPKEMENMSKEERDEYLRLSAVKYIGNRVAKGMTE
EYRVKRAEDVIDRYLLPHMGIEPEKRHNKAIYLAEMTEMLLQVIDQQREPHDKDHYTNKR
LRVSGDLMEDLFRVAYTSLTRDMSYQLERSISRGKDLSIKQAVRSDVLTENIKHAIATGN
WVGGRAGVSQLLDRTSYMGTLSHLRRVVSPLTRSQPHFEARDLHPTQFGKICPNETPEGP
NCGLVKNLALLCKISEGSDTQDIIDVIKSMGVLDGNNAKIYINGELLGNCDEPVAFTEEM
REKRRAGEISSEMNITYYDDTNEIYIFNDPGRARRPLIIVKDGVPLLTKEHLDQVASKEL
KWNDLIDMGLIEYLDAEEEENAYIAMSVKDLNPDHTHLEIDPATMLGICAGIIPFSDHNS
SPRNTMESGMTKQALGLYVSNYALRTDTRAHLLHHPQKPIVKTRIIDSTEYDKRPSGQNF
VVALMSYEGYNMEDAMILNKSSIERGLGRSSFFRSYDTSEKRYPGGQEDKFEIPDKSVKG
YRSDAAYRHLDEDGVVNPESYVESGDVLIGKTSPPRFLEEIDEFGTVSEKRRETSVTVRH
GEKGIVDAVLLTETVEGSRLAKIRVRDTRQPEFGDKFASRHGQKGVVGLILSQEDVPFTE
DGIVPDVIVNPHAIPSRMSVGQVLEMVAGKAGCLEGKRIDGTPFNPEIEKHIKQTLIDYG
FESAGCESLYSGVTGERIEAEIFVGVAFYQKLHHMTSDKVYARSRGPVQVLTRQPTEGRA
REGGLRFGEMERDCLIAHGAALALKERLLDESDKYEAIVCGECGMLAVYDKSRNKTYCPI
CGESESYSIEISYAFKLLLDELKSLCIFPKLVLGDKV
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagagacatgggaattagttgatgcattttttgatgaatataatcttgtagat
catcatattaaatcatacaatgattttgtaaataatcgtattcaaaaaatcatagatatt
actgatcctattagtttagaaaacggtaaatatactgtacgtacaggtaaattgcatatt
gaaccaccatttactaaagaggcagacggttctaaaagttcaatctatccaacagaagct
agacttaggaatttaaactattctgcacatatgtatttagaaatggctttggatattgaa
ggtgaacctgaggctgattttgaagatgtatatattggtgaattgccagttatgcttaaa
tcaaatatctgccacttacatggtttaactgatgaggaattaatcgaaaaaggtgaagat
cctcaagacccaggcggttacttcattgtaaacggttctgaaagagctgttgttacaatg
gaagaaatcgctccaaacaaaattatcttagaacgtattggggaagttgaagatagacgt
gctaaagctattgtaacttctattaaaagtggtttcagagcaagaatctctttagaatat
aagaaacctcgtaaaagtggtgttttcttaagaatatccttcccatatgttcctggtgaa
attccacttgtaattcttttacgtgctttaggtctttctacagatcaagaaattattact
gcaatatccgatgatttcaacttccaaatgatgattgcagatgatattcaagtatctgaa
gattcattaaaattagatcctaaagaaatggaaaatatgtccaaagaggaaagagatgaa
tacttacgtttatctgcagttaaatatatcggtaaccgtgttgctaaaggtatgactgaa
gaataccgtgttaaacgtgcagaagatgtaatcgataggtatttattacctcatatgggt
attgaacctgagaaacgtcataataaagcaatctatttagctgaaatgactgaaatgtta
ctccaggttatagatcaacaacgtgaacctcacgataaggatcattataccaataaaaga
cttagggtatctggagatttaatggaagatttattcagggtagcatatacttcccttaca
agagatatgagttatcaattggaaagaagtatctctcgtggtaaagatttatctattaaa
caagcagtaagatccgatgttttaactgaaaacattaaacatgctattgcaacaggtaac
tgggttggaggtagagctggtgtaagccaacttttagataggactagttatatgggtaca
ctctctcacttaagacgtgttgtatctcctttaacaagaagtcaacctcactttgaagca
agagatttacacccaactcaatttggtaaaatctgtcctaacgaaactcctgagggacct
aactgtggattagtaaagaacttagcactattatgtaagatttccgaaggttcagataca
caggacattattgatgttattaaaagtatgggtgttcttgatggaaacaacgctaaaatt
tacatcaatggtgaacttttaggtaactgtgatgagccggtagcatttacagaggaaatg
agggaaaagagaagagctggagaaatatcatcagaaatgaatattacctattatgatgat
actaatgaaatctatatcttcaatgatccaggtagagcaagaagaccattaatcattgtc
aaggatggtgttccattacttactaaagaacatcttgatcaagttgcttctaaggaactt
aaatggaatgacttaattgatatgggtcttattgaatatttagatgctgaagaggaagaa
aacgcatacattgcaatgtcagttaaagatttaaatccagatcatactcatctagaaatc
gaccctgctaccatgcttggtatttgtgcaggtattattccattttcagaccataactcc
tctccaaggaacactatggaatccggtatgacaaagcaagcattaggtttatatgtatct
aactatgcattacgtacagatactagggcacacttattacatcaccctcaaaaacctatt
gtaaaaacacgtatcattgattcaactgaatatgataagagaccatctggtcaaaacttt
gttgtagcattaatgagttacgaaggatataatatggaagatgctatgattttaaataaa
tcttctattgaaagaggtttaggtagaagttctttcttcagatcatatgatacctctgaa
aaacgttatcctggtggacaagaggataaatttgagattcctgataaatccgttaaagga
tacagatcagatgctgcatacagacacctagatgaagacggtgttgtaaatcctgaaagt
tatgtagaatctggagatgttcttattggaaaaacatcacctcctagattccttgaagaa
atcgatgaatttggtactgtttccgagaaacgtagagaaacttctgtaactgtacgtcat
ggtgagaagggtattgttgatgcagttctcttaactgaaactgttgaaggtagtcgtctt
gcaaaaatacgtgttagagatactagacaacctgaatttggtgataaattcgcatcaaga
cacggtcaaaaaggtgtagtaggtcttatattatctcaagaagatgtgccatttaccgaa
gacggaattgtaccggatgttattgtaaatcctcacgctatcccttcaaggatgtctgta
ggacaagtacttgaaatggtagctggtaaagctggttgtcttgaaggtaaaaggatagat
ggaactccatttaatcctgaaatagaaaaacacatcaaacaaaccttgattgattatggt
tttgaatctgcaggatgtgaatctttatacagtggagtaactggtgaaagaatagaggct
gaaatcttcgttggagtagcattctatcagaaattgcaccacatgacttctgataaagtt
tatgctcgttctagaggtcctgtacaagtacttacacgtcaacctactgaaggtagagca
cgtgaaggtggattaaggtttggagaaatggaaagagattgtcttattgctcatggtgca
gctcttgcacttaaagaaagattacttgatgaatcagataaatacgaagctattgtctgt
ggagaatgtggtatgcttgcagtatatgataaaagtagaaataaaacctattgtcctatc
tgtggtgaatcagaatcatactcaattgaaatctcttatgcatttaaattattacttgac
gaacttaagagtttatgtatcttccctaaattagtcctaggagacaaagtttag
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