Methanobrevibacter sp. AbM4: Abm4_0445
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Entry
Abm4_0445 CDS
T02687
Symbol
tfb
Name
(GenBank) transcription initiation factor TFIIB Tfb
KO
K03124
transcription initiation factor TFIIB
Organism
meb
Methanobrevibacter sp. AbM4
Pathway
meb03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Abm4_0445 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meb03021
]
Abm4_0445 (tfb)
Transcription machinery [BR:
meb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Abm4_0445 (tfb)
Prokaryotic type
Archaeal type
TFB
Abm4_0445 (tfb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Ribosomal_S27e
HTH_Tnp_ISL3
Lar_restr_allev
Cyclin_C
Cas12f1-like_TNB
Zn_ribbon_tTFIIB
Cas_Cas5d
UPF0181
BRF2-like_C_cyclin_rpt
HTH_AsnC-type
Zn_ribbon_LysW
DZR
Motif
Other DBs
NCBI-GeneID:
15797941
NCBI-ProteinID:
AGN16351
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All DBs
Position
539578..540510
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AA seq
310 aa
AA seq
DB search
MQHDVFDIDKQTRCPECGSDQLIGDYERAEVVCANCGLVIDENLVDMGPEWRAFDHEQRD
KRTRVGAPITYTIHDKGLSTMIDWRNKDIYGRDIPARNRAQWYRLRKWQRKIRISGATER
NLAFALSELDRDSSRLGLPRSVRESASVVYRSAVDNKLIRGRSIEGVVAASLYAACRRCK
VPRTLDEIAEVSRVTKKEVGRTYRFLTRELNIKLPPTSPVDYVPRFASELGLSGEVQSKA
IDIINKAMEKGLTSGRGPTGVAAAALYIASVLLGERKTQRDVAEIAGVTEVTIRNRYKEL
TEQLEMGVTL
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgcagcatgatgtatttgatatagataagcaaactcgttgtccagaatgtggatcagac
caattaattggtgattatgagagggcagaagttgtttgtgcaaattgtggactcgttatt
gatgaaaaccttgttgatatgggaccagaatggagagcatttgaccacgagcaaagagat
aaaaggactcgtgtaggagcacctatcacttataccattcacgataagggtttaagtaca
atgattgattggaggaataaagatatctatggaagagatattcctgcaagaaatagggct
caatggtaccgtttaagaaaatggcaaagaaaaatcaggatttctggtgctacagaaaga
aacttagcatttgctttaagtgaattagatagggattcctcaagacttggtcttccaaga
agtgtaagggaatctgcatctgttgtatacagaagtgcagtggataataaacttatacgt
ggaagaagtattgaaggtgttgtagctgcttcactttatgccgcatgtagaagatgtaaa
gtacctcgtactttggatgagattgctgaagtttcccgtgttactaaaaaagaagttgga
aggacttacagattcttaactcgtgaattgaatattaaattaccacctacttcaccagta
gactatgttccaaggtttgctagtgaattaggtttatctggagaggttcaatctaaagct
attgatattattaataaggcaatggaaaaaggattaacttctggaagaggtcctactggt
gtagctgctgctgcattatatattgcatcagttctcttaggtgaaaggaaaactcaaaga
gatgttgcggaaattgcaggtgttacagaagttacaataagaaacagatataaagaactt
actgaacaattagaaatgggcgtaaccttataa
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