Methanobrevibacter sp. AbM4: Abm4_0863
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Entry
Abm4_0863 CDS
T02687
Name
(GenBank) ATP-dependent DNA helicase UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
meb
Methanobrevibacter sp. AbM4
Pathway
meb03420
Nucleotide excision repair
meb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Abm4_0863
03430 Mismatch repair
Abm4_0863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meb03400
]
Abm4_0863
Enzymes [BR:
meb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Abm4_0863
DNA repair and recombination proteins [BR:
meb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Abm4_0863
MMR (mismatch excision repair)
Other MMR factors
Abm4_0863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
DEAD
AAA_11
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-GeneID:
15798356
NCBI-ProteinID:
AGN16752
UniProt:
R9SJ81
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All DBs
Position
1070231..1072669
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AA seq
812 aa
AA seq
DB search
MVNMISYEEFEQIVVKILERDIASNQDQKSAIQAGLNQSLFIVAGPGSGKTTVIVLKILK
YLFVDDVEPEEIVATTFTRKAADELTSRILDWGYKIKDYLLNESMNKGYEFEKIRKIAHI
DFNQILTGTVDSVAQDLLRVNRQPGTNLPNVIESFVTESAMTNVGLYRNDRYLNEDLQKY
LGELKGRDKIKNPSMMSQMILSIKNKMYYDVVDMEEVRQTSTDPGQIQVLDAIDEYEKEL
RGRNSIDFPMLEDLFLEKLENEEFEDFLSNVKIVLVDEYQDTNLLQEKIYFKIAEFAIRN
GGNITVVGDDDQSLYRFRGATVDLFTNFPRRASESLGIYVNVINLKENYRSTENIINLCN
HFAELDEKYQNARVSHKPPIVCPENNKGKNIPIIGLFRNTQEILARDLSNLISELINKGT
VRRKVQNIVDTKSFEKLNNSNNLALKSKDKEDRYIEISLDSEDGSASDIAFLTYSTKETS
RGHNYKFPYYLRKTLEKRNVEVFNPRGQDIQDIEAVQIFCGLMLECIDPDMKIQKMDKNI
PKSSFRIMRRWRENARKFMDKDPEPVSPITLKEFVELWQLRKPYKMDKWPSSVRLMDLAY
KLLTWIDYLQEDVEGIVYLEAITQTINQTGFFNEYGSEIYFDTESKEIKSINELYWNVFI
PIASGGVSIEEELLETLPDNRLNIMSIHQSKGLEFPLVIVDVGSEFDKDLANTSFLRFPK
KGGQDQELEDRIRKYSKDMKIVKRDQVDRSFDDLTRRYFVAFSRAQDVLILVGLTSNIYG
YDTKDKHRNIPNIALGWNRDEEFIGFNEMYMI
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggttaatatgattagttacgaggaattcgaacagattgtagttaagatacttgaaagg
gatatagcatcaaatcaagatcaaaagtctgctattcaagctggtttaaatcaatctctt
tttattgtagcaggtcctggttctggtaaaacaactgtgattgtacttaaaatattgaaa
tatttatttgtagatgatgttgaacctgaggagattgttgccaccacattcacacgaaaa
gctgcagatgagctaaccagtagaatattggattggggatataaaatcaaggattacctt
ttaaatgaaagtatgaataaaggttatgagtttgaaaaaattcgaaaaatagcccatatt
gattttaaccaaatattaaccggtaccgtagatagtgttgcacaggatttacttagagtc
aaccgtcagccaggtaccaatttacctaatgtcattgaatcctttgttacagaatcagct
atgaccaatgtaggcctttatagaaatgaccgttaccttaacgaggaccttcaaaaatac
cttggagagctaaagggtagggataaaatcaaaaatccgtccatgatgagtcaaatgatt
ctatccattaaaaataagatgtactatgatgttgttgatatggaggaagtaagacaaaca
tcaacagatcctggacaaattcaggttttggatgctattgacgagtatgaaaaggaactt
agaggacggaacagtattgattttccgatgctagaggatttattccttgaaaaacttgaa
aatgaagaatttgaagacttcttatccaatgttaaaatagttcttgtagatgaataccag
gacacaaacctcctacaggagaagatttactttaagatagccgaatttgcaattagaaat
ggcggaaatataacggttgtaggtgatgatgaccaatcattgtaccgttttagaggggca
accgtagatttgtttaccaatttcccaagacgtgcatcagaatcactaggcatttacgtg
aatgtaattaatcttaaggagaactatagatccactgagaatattatcaatctatgtaac
cattttgcggagctagatgaaaaatatcagaatgcacgtgtaagtcacaagccaccaatt
gtatgtcctgaaaacaacaagggaaaaaacataccgattattggtcttttcagaaacact
caggaaatccttgcaagggacctgtcaaatcttataagcgaacttatcaataagggaact
gtaagaaggaaggtccagaatattgtggataccaaatcctttgaaaaattgaataacagt
aacaatttagctttgaaatccaaagataaggaagacagatatatcgagattagcttagac
agtgaggacggttctgcatcagatattgcgtttttgacatactcaacaaaggaaacatca
agaggccacaactataaattcccatattatcttagaaaaacacttgaaaaacgtaatgtg
gaagtttttaatccacgtggtcaggatattcaggatattgaggcagtacaaatattctgc
ggacttatgctagaatgtattgaccctgacatgaagattcaaaaaatggataaaaacatt
ccgaaatcatcatttagaattatgagacgttggagagaaaacgcacgtaaattcatggat
aaggatccggaacctgtaagtcccattaccctcaaggaatttgtagaattatggcaactt
agaaaaccatataagatggataaatggccttccagtgtcagattaatggatctcgcatac
aagctattaacatggatcgattaccttcaggaagatgttgaagggattgtttatcttgag
gctattacccagaccattaaccagacaggattcttcaatgaatatggttctgagatatac
tttgatacagagtcaaaagaaataaaatcaatcaatgaattatattggaatgtattcata
ccaattgcatccggcggggtaagtattgaagaggaattacttgaaaccctaccagacaat
agacttaatataatgtccatacatcaatccaagggtctggaatttcctctcgtaatagtt
gatgtaggttctgaatttgacaaggaccttgcaaacacaagctttttaagatttcctaaa
aaaggcggacaagaccaggagcttgaggatagaattcgtaaatatagtaaagatatgaaa
atagttaaaagggaccaggttgaccgttcctttgatgatctgacaagacgttattttgtt
gcattctcaagggcccaggatgttttaatacttgttggtctaacttccaatatatatgga
tatgacaccaaagataaacatagaaatattccaaacatcgcattaggttggaatagagat
gaagaattcataggttttaatgaaatgtatatgatttaa
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