Methanobrevibacter sp. AbM4: Abm4_0879
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Entry
Abm4_0879 CDS
T02687
Symbol
rad50
Name
(GenBank) DNA double-strand break repair protein Rad50
KO
K03546
DNA repair protein SbcC/Rad50
Organism
meb
Methanobrevibacter sp. AbM4
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meb03400
]
Abm4_0879 (rad50)
DNA repair and recombination proteins [BR:
meb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Abm4_0879 (rad50)
Archaeal homologous recombinant proteins
Abm4_0879 (rad50)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
AAA_15
AAA_29
AAA_27
SbcC_Walker_B
COG3_N
Rad50_zn_hook
ABC_tran
DUF7801
AAA_16
Lzipper-MIP1
Endonuc-dimeris
Motif
Other DBs
NCBI-GeneID:
15798371
NCBI-ProteinID:
AGN16766
UniProt:
R9SKV8
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Position
complement(1102269..1105046)
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AA seq
925 aa
AA seq
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MIFDRLQLKNFKSHLNTDIKFNSGITLIVGENGAGKSSIFEAISFALFKQHSARTINDLM
RSSKDNSAYNAMSVSLEFTSNGNHYKVVRTRDKTSSKAMLYIKKPNMNDDSDFSYGVICE
NDKNVTAEIQKILQMDSDLFLNAIYVRQGEIAELVSKTSAEKKKLIAKLLGIDSLEKSYN
NLRPFINDFEHKESELKGKLSKKTDVEEELKNKKAEYEDLKKDGINVEQECIQTEKNFDE
LNSKKVFLEANKEEFNNIKIKLDNGLNEIDRLKSEKNDLQNKLDEITKAESEIQKLEKYV
NKLPVYLEFQEASKRLIDLKHTRDGLEEDKNIVSKQKEILEENKTSYEDYSRLEKIIEDL
RDDKSKVDGDVKVLDKYLEDKSILEKEFNKDNNDLEDFKIAISEKLAKDGIDDVKDKELG
EIHKVISDEIQSSEYRITKIDDEKSNKKSEIAICEDNIKTSEKPLEELDSVGNKCPICQS
DISNQKKLDLKKSYKKSIINSRKRITQNNKDLVILDKEKSGIKARINRLNSIKDDISENI
YLVNKIENNKNKLDNLDKEIMAKESSRDMVNKLAKAIESESEKRDFSKEGYFKYMKAKGL
LDERPSINEIDHKIANINDDWDFQVRKIKLAINKDSHLTTEITEEELSYRIDNLKEKETR
YNQLKGYVKIKGSIESQLLTKKESLSSTQNLVDNYRKNIQLIKYDEEAYNTLVSNLATVE
TKLKRLQSEVSKIEGQAIALGGQIDSLIKEQKEYTRLQKEYEDIRTFVSFLDEIRFLFSK
DGMQEDLRKLSRPTIQKYTKEFFEEFNFDYSDLILDDEFNVSLYGPEGESTLDMVSGGEK
IAIALALRLGITKAMSSGAMETILLDEPTIHLDSFRRHELIDLLRKMSSLPQMIIVTHDE
ELENAADSLIKIGKKDGISQVIGVE
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgatatttgatagattacaacttaagaatttcaagtcccatttaaacacagatattaag
tttaactctggtataaccttgattgtaggggaaaatggtgctggtaaatcttcaatattt
gaggctattagtttcgcattatttaaacaacactctgccagaacaattaatgatcttatg
agatcatcaaaggataattcagcatataatgctatgagtgtaagtttggaattcacctct
aatggaaaccattataaggttgtaagaacccgtgataaaaccagttccaaagcaatgtta
tatattaaaaaaccgaatatgaatgatgattctgattttagctatggtgtaatctgtgaa
aatgataagaacgttacagcggaaatccagaaaatacttcaaatggattcagatctgttc
ttgaatgcgatatatgtaagacagggtgagattgcggagcttgtaagtaagacatctgcg
gagaaaaagaaacttattgctaaattgttgggtattgattcacttgaaaaatcatataat
aacttaaggccatttataaatgattttgaacataaggaatccgagctaaaaggtaaatta
tctaaaaaaacggatgtggaagaagaacttaaaaataaaaaagccgaatatgaggacctt
aaaaaagatggaatcaatgttgaacaggagtgcattcaaactgagaaaaacttcgatgag
ttaaatagtaaaaaggttttcttagaagctaataaagaggagttcaacaatattaaaata
aaattggataatggtttaaatgagattgataggcttaaatccgagaaaaacgatcttcaa
aataaactagatgaaattaccaaagcggaatccgagattcaaaaattggaaaagtatgta
aataaattaccagtatatcttgaatttcaggaagcttctaaaagactcattgatttaaaa
catacaagggacggtcttgaggaggataaaaatattgtatctaagcaaaaggaaatcttg
gaggagaataaaacatcatatgaagattattcacgtcttgaaaaaatcattgaagatcta
agggatgataaatctaaagttgatggggacgttaaggttctagataaatacttggaagac
aaatcaattttagaaaaggaattcaacaaagataataatgatttggaagactttaaaata
gctatttctgaaaaattagctaaggacggtattgatgatgtaaaggataaagaactaggt
gaaattcataaggtaatatccgatgagattcaaagttcagaatatagaatcactaagata
gatgatgagaaatctaataaaaaatcagaaatagcaatctgtgaagataatatcaaaaca
tcagaaaaaccattggaagaattagattccgtaggtaataaatgtccgatatgtcagtct
gatattagcaatcagaaaaaattggacttaaagaaatcatataaaaaatctataatcaat
agtagaaaacgaattacccagaataataaggatttggttattttggataaggaaaaatcc
gggattaaagctagaataaatagactaaattcaataaaggatgacatttctgagaatatt
tacctggtaaataagattgaaaacaataaaaataaactagataatcttgataaggaaatc
atggctaaagagtcaagtcgtgatatggttaataaattagctaaggccatagaatccgag
tctgaaaaaagagacttttctaaagaaggttactttaaatatatgaaagctaaaggactt
ttagatgaaagaccttcaatcaatgaaattgaccataagattgccaatataaatgatgat
tgggacttccaggttaggaagattaaattggccattaataaggatagtcatctaacaact
gagattaccgaagaggaattgtcctacagaattgacaatttgaaagagaaggaaacaaga
tacaatcaacttaagggttatgttaaaattaagggttccattgaatcacagctattgact
aaaaaagagtctttaagttcaacacagaaccttgtagataattatcgtaagaatattcaa
ctaataaaatatgatgaggaagcatataatacacttgtttctaatttggcaactgttgag
acaaaattgaaaaggttacaatcagaggtttctaaaatagaaggacaagctattgctctt
gggggacaaattgattcattaatcaaggaacaaaaagaatatacaaggttacagaaagaa
tatgaagatattcgaactttcgtaagtttcttggatgagatcagattcttattctcaaag
gacggaatgcaagaggatttaagaaaactttcaagacctaccattcaaaaatacacaaag
gaattctttgaagagttcaattttgattattctgatttaatattggatgatgaatttaat
gttagtttatatggacctgagggagaatctaccttggatatggtgagtggtggtgaaaaa
atagctattgcacttgcattaagattaggtattacaaaagccatgagtagtggagctatg
gagacaatactcttagatgaacctacaatacatcttgatagtttccgtagacatgaatta
atagatcttttaagaaaaatgtcctcacttccacagatgattattgtaactcatgatgaa
gaattagagaatgccgctgattcccttataaaaataggtaaaaaagatggtatttcccag
gtaataggtgttgaatag
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