Methanobrevibacter sp. AbM4: Abm4_0920
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Entry
Abm4_0920 CDS
T02687
Symbol
rrp4
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
meb
Methanobrevibacter sp. AbM4
Pathway
meb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Abm4_0920 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meb03019
]
Abm4_0920 (rrp4)
Messenger RNA biogenesis [BR:
meb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Abm4_0920 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Abm4_0920 (rrp4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
ECR1_N
KH_6
KH_1
RRP4_S1
RRP40_S1
KH_2
S1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_KRR1_2nd
Motif
Other DBs
NCBI-GeneID:
15798412
NCBI-ProteinID:
AGN16807
UniProt:
R9SJE6
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Position
complement(1143935..1144939)
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AA seq
334 aa
AA seq
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MIYVENKDLVIPGDVLADEDFYSGRGTFKENGQICSSLMGLVSLRNKKISVIPLKSKYVP
KKGDVVIGKIEDVRFSMWDVDINSPYSGIIPSSEVFGRDKKSLSKVFDVGDVLFLRVVDV
DEVKKVKLGLKGRGMGKFKGGIIVDIAPTKVPRLIGKKGSMINMIKDKTGCKIVVGQNGL
VWVRGEPKMEQITRDIIHIIEEQAHTSGLTNRIRDKLYLEIDGEIPDDLDEDLPEESRTS
DFSSHGNRKHNKGFHKRLNKKDNSASKYELEKPKLENFKEELKEEIEAKRQAETKRNNDF
ISNLENIEKEKKSHKSHFEIGRKKSGFSILRDDE
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgatttatgtagaaaataaagacttagtaattcctggtgatgttcttgcagatgaggat
ttctactcaggaagaggaacttttaaagagaatggtcaaatctgttcttctttaatgggc
ttagtttccttaaggaataaaaaaataagtgttattcctttaaaaagtaaatatgttcca
aagaagggagatgtggtcatcggtaaaatcgaagatgttcgattctcaatgtgggatgta
gatattaattccccatattctggtataatcccatcttctgaggtttttggaagagataaa
aaaagtctaagtaaggtttttgatgttggagatgttctatttttaagagttgtagatgtg
gatgaggttaagaaagttaaacttggacttaaaggccgtggaatgggtaagtttaaggga
ggaattattgtagacattgctccaactaaggttccacgtttaattggtaagaaaggttcc
atgattaatatgattaaggacaagactggttgtaaaattgtggttggtcaaaacggtctt
gtttgggttaggggagaacctaagatggaacaaattactagagacattattcatattatt
gaagaacaggcacatacctctggtttaactaatagaatccgtgataaattatatcttgaa
attgacggtgaaattcctgatgatttggatgaagatctccctgaggagtcaagaacctca
gattttagttctcacggtaatagaaaacataataaaggattccataaaaggttaaataag
aaagacaattcagccagtaaatatgagttagaaaaacctaaacttgaaaactttaaagag
gaattgaaagaagagattgaggctaaaagacaggctgaaaccaaaagaaataatgatttt
ataagtaatttggagaatattgaaaaggagaaaaaatctcacaagtctcattttgaaatt
ggtcgtaaaaaatcaggtttttctattttaagagatgatgagtag
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