Methanobrevibacter sp. AbM4: Abm4_1139
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Entry
Abm4_1139 CDS
T02687
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
meb
Methanobrevibacter sp. AbM4
Pathway
meb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Abm4_1139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meb03019
]
Abm4_1139
03009 Ribosome biogenesis [BR:
meb03009
]
Abm4_1139
Enzymes [BR:
meb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Abm4_1139
Messenger RNA biogenesis [BR:
meb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Abm4_1139
Ribosome biogenesis [BR:
meb03009
]
Prokaryotic type
rRNA helicases
Abm4_1139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
15798630
NCBI-ProteinID:
AGN17022
UniProt:
R9SK03
LinkDB
All DBs
Position
complement(1361794..1363092)
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AA seq
432 aa
AA seq
DB search
MGNISFNDFKISDEIKKAVEEMGFEEPTPIQKLAIPPALKGKDVIGQAQTGSGKTVAYAI
PALNKIWIPDKSPQVLVLTPTRELAIQVAGEFAKLSEFMDKIRILPVYGGQPIGRQTRVL
KKGVHIVIGTCGRVLDHLRKGTLDISAIETLVLDEADEMLDMGFIEDIEDIIAQTPKQRQ
TLLFSATMPNEIKRIEQKYQNNPKFLKVKETKLTVPKIEQYYFETPRNKKISVLCNLLDM
YDINLALVFCNTIKQVDFLQKKLKSRGYSVGAIHGKMKQDKRNRVMNKFRKGKIDILIAT
DVAARGIDVENVDVVFNYDVPNSDEFYVHRIGRTGRAGKVGYAFTFVSGRDVKYLRSIQE
YTHTKIKQRKAPTFEDVENRRSNVILSDVKKVIDNDNLDSDIKLIENLILDDYNSVEIAA
ALLRILKKEKDN
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatattagttttaacgattttaaaatatcagatgagattaaaaaagccgtggag
gaaatgggttttgaagaaccgactcccatccaaaaattagctattccccctgcattaaag
ggtaaggacgttattggtcaagcacaaacaggtagtggaaaaacggtggcctatgcaatt
cctgctttaaacaagatttggattcctgataagtcaccacaggttcttgttttaaccccc
acacgtgaattggctatccaggttgcaggggaatttgccaagttatcagaatttatggat
aaaatcaggattttacctgtttatggtggtcagcctattggaagacagaccagggtattg
aaaaaaggagtccatattgtaattggtacatgtggacgtgtacttgatcatttgagaaaa
ggaacattggatatatcagctattgaaacccttgtcttggatgaagctgatgaaatgttg
gatatggggttcattgaggatatcgaagacataatcgctcagacacctaaacaaagacaa
actttacttttctcagcaacaatgccaaatgaaataaaaagaattgagcagaaatatcag
aacaatcctaaatttttaaaggttaaggaaaccaaactgaccgttcccaaaattgagcaa
tattattttgagactccaagaaacaagaaaatatctgttctatgtaatcttctggatatg
tatgatattaatttggcattagttttctgcaatacaataaaacaggtggatttcttacag
aaaaaacttaaaagtaggggatattctgttggagctattcatggaaaaatgaaacaggac
aaaagaaacagagtgatgaataagtttcgtaaaggtaaaatagatattctcattgcaacc
gatgtggctgcaagaggtattgatgtagagaatgtggatgttgtctttaattatgatgtg
cctaatagtgatgaattctatgttcataggattggtagaacaggaagggctggaaaggta
ggttatgcttttacctttgtatctggaagggatgtcaaatatttgagaagtattcaggaa
tacacccatactaagataaaacagagaaaagcccctacatttgaggatgtggagaacaga
cggtccaatgtaatattgtctgatgttaaaaaggttattgataatgataacttggatagt
gatataaagttgattgagaatttgatcttggatgattataattccgttgaaattgcagct
gccttgttaaggattttaaaaaaagagaaagataattaa
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