Methanobrevibacter sp. AbM4: Abm4_1240
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Entry
Abm4_1240 CDS
T02687
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase subunit D RpoD
KO
K03047
DNA-directed RNA polymerase subunit D [EC:
2.7.7.6
]
Organism
meb
Methanobrevibacter sp. AbM4
Pathway
meb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Abm4_1240 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meb03021
]
Abm4_1240 (rpoD)
Enzymes [BR:
meb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Abm4_1240 (rpoD)
Transcription machinery [BR:
meb03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Abm4_1240 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Fer4_7
RNA_pol_L_2
Fer4_9
Fer4_10
Fer4_2
Arif-1
DUF5939
Motif
Other DBs
NCBI-GeneID:
15798732
NCBI-ProteinID:
AGN17123
LinkDB
All DBs
Position
complement(1488702..1489505)
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AA seq
267 aa
AA seq
DB search
MEIEVKSQKDDEIVFIIRDAEVPFVNAIRRIAMMGVPKLAIEDVNIVKNESAMFDEVLAH
RLGLTPLVSDLESIEGLVLPDECDCDDYCPKCSVSFTLNKKGPGVVYSKDLVSSDPKIKP
VYDTIPLVKLKENEEIELEAVAKLGFGKDHAKWMPTTVCAYKQYPKITFNDDVEIDYDCA
SACPRGILKADRRSKKIKVLDIENCAMCKSCVRACVNDYIHVGYEENNFIFKIETDGSMP
PKEVLLKACDVLADKADELIEFSKGGK
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggagattgaagtcaaaagtcaaaaagatgatgaaattgtattcattatccgtgatgca
gaagtaccttttgttaatgcaattagaagaattgctatgatgggagttcctaaattagca
attgaagatgtcaacattgttaagaatgaatctgcgatgtttgatgaggtactcgcacat
agattaggtttaactcctttagtttctgacttggaatctatcgaaggcctagttcttcct
gatgaatgtgactgtgatgactactgcccaaaatgcagtgtttcatttacattaaataaa
aaaggcccaggagttgtctattctaaagatttagtctcttctgaccctaaaattaaacct
gtatatgacacaattcctttagtaaaacttaaagaaaatgaagaaatcgaacttgaagct
gtagcaaaacttggcttcggtaaagatcatgctaaatggatgccgactacagtttgtgca
tacaaacaatatcctaagattacctttaatgatgatgtggaaatcgattatgattgtgct
tctgcatgtcctagaggtatattaaaagcagatcgcagatctaagaaaattaaagtttta
gatattgaaaactgtgcaatgtgtaaaagctgtgtaagagcatgtgtcaatgattatatt
catgttggatatgaagaaaataattttatttttaaaatagaaactgatggatcaatgcct
ccaaaagaggtcttattaaaagcttgtgatgttttagcggataaagcagatgagctaatt
gaatttagtaaaggaggaaaataa
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