Methanobrevibacter sp. AbM4: Abm4_1245
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Entry
Abm4_1245 CDS
T02687
Symbol
cbf5p
Name
(GenBank) H/ACA RNA-protein complex component Cbf5p
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
meb
Methanobrevibacter sp. AbM4
Brite
KEGG Orthology (KO) [BR:
meb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
meb03016
]
Abm4_1245 (cbf5p)
Enzymes [BR:
meb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Abm4_1245 (cbf5p)
Transfer RNA biogenesis [BR:
meb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Abm4_1245 (cbf5p)
Prokaryotic type
Abm4_1245 (cbf5p)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_C_2
TruB_N
PUA
DKCLD
Pus10_C
UPF0113
Motif
Other DBs
NCBI-GeneID:
15798737
NCBI-ProteinID:
AGN17127
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Position
complement(1491703..1492665)
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AA seq
320 aa
AA seq
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MSELLEKSRFETDFKYGCVPEERTIEEYLNKGVINLDKPSGPTSHEVDSWVLRILEADKT
GHGGTLDPKVTGILPMGINSATRSMQLLSLASKEYVCLMNIHESLDEDIIREVFDEFTGK
IFQMPPVKSAVKREIRAREVYYANISEIEDRFVLFRIGCQAGTYVRTYCHDIGEALGCGA
HMAELRRTQVGSFSEDNNLVTLQDITDAYYYYKHEGNEKYLRESIMPMEEAASHLPKIYI
KDSTVAAITHGADLAAGGISILSDDIRPGDTVAIMTLKGELVGSGISRYSSQDILDAENG
IIVNTNHVFMDENLYPISWK
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaattattggaaaaatctcgttttgaaacagattttaaatatggctgtgtacct
gaagaaaggacaattgaggagtatttaaataaaggtgttattaatttagataaaccttct
ggacctacttctcatgaagttgattcctgggttttaagaattttggaagctgataaaacg
gggcatggtggaacattggatcctaaggttacaggaatcttgccaatgggcattaattcc
gcaacacgttccatgcaacttttgtcattagcatcaaaagaatatgtttgtctcatgaat
attcatgaaagcttggatgaggatataatcagagaggtttttgatgagtttacaggtaaa
atatttcagatgccccctgttaagtctgcagttaaaagggaaataagggcaagggaagtt
tattatgcaaatatttccgagattgaagatagattcgtattatttagaataggttgtcaa
gcaggtacctatgttagaacttattgtcatgatattggtgaggctttgggctgtggagca
catatggctgaacttagaaggacacaggtaggatccttttctgaggataataatcttgtt
accttacaggacattactgatgcatattattattataaacatgagggtaatgagaaatat
ttaagggaatccattatgccaatggaggaggctgctagtcatttgcctaagatatatatt
aaggattctactgttgccgcaattactcatggtgcagatcttgctgcagggggaatctca
atattatctgatgacattcgtccaggggataccgttgcaataatgactttaaaaggtgaa
ttagtaggttccggtattagccgttattcctctcaggatattttagatgctgaaaatggc
attattgtaaatactaatcatgttttcatggatgagaatctttatccaatttcatggaaa
tga
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